BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0856500 Os03g0856500|AK061449
         (309 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24490.1  | chr5:8365690-8367178 FORWARD LENGTH=309            237   5e-63

>AT5G24490.1 | chr5:8365690-8367178 FORWARD LENGTH=309
          Length = 308

 Score =  237 bits (605), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 124/243 (51%), Positives = 169/243 (69%), Gaps = 18/243 (7%)

Query: 74  WDGPLSSVRLIMQGRNVKLNEKVKEHIEEKAGRAVAKHSQLVKEVDVRLSARGGELSRGP 133
           WDGPL+SV+LI+QG+N++L+E +K+H+EEK G++V KHS LV+EVDVRLS RGGE  +GP
Sbjct: 75  WDGPLASVKLIIQGKNLELSEPIKQHVEEKVGKSVQKHSHLVREVDVRLSVRGGEFGKGP 134

Query: 134 KICRCEITLFTKRHGVIRAEEDAESTYASIDLASSXXXXXXXXXXXXXTD-VRHLKG--- 189
           +I RCE+TLFTK+HGV+RAEEDAE+ YA IDL S+             +D  RH+KG   
Sbjct: 135 RIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKEKDSDHGRHMKGFNR 194

Query: 190 --TKPPVSDWPPSLLDNNDDDAQAQLKDLEEAVG-AEDEDTVLTKVVRTKVFEMPPLSVE 246
              + PV +  P + D  D          + +VG  E+ED ++ ++VRTK FEMPPL+V 
Sbjct: 195 LKVREPVIE--PVVEDVED--------STDSSVGEEEEEDDLIKEIVRTKTFEMPPLTVA 244

Query: 247 EAMEQLVNVDHNFYAFRDEKTGEMNVLYKRKEGGFGLIVPKGDGHLHK-ETIPNSDHHHP 305
           EA+EQL  V H+FY F++E+TGE+N++YKRKEGG+GLI+PK DG   K E +P    +  
Sbjct: 245 EAVEQLELVSHDFYGFQNEETGEINIVYKRKEGGYGLIIPKKDGKAEKVEPLPTEQLNEH 304

Query: 306 SLA 308
           S A
Sbjct: 305 SFA 307



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,174,493
Number of extensions: 199455
Number of successful extensions: 481
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 480
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 211
Effective length of database: 8,419,801
Effective search space: 1776578011
Effective search space used: 1776578011
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)