Os03g0852600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF565 family protein.
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Os03g0852600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF565 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.15 | 0.236 | 11.9 | -1.14 | 1.1 | -0.519 | -0.403 | 0.121 | -0.319 | 22.9 | 24.7 | 218 | -- | -- |
| 25.13 | 0.233 | 11.9 | -1.13 | 1.11 | -0.541 | -0.392 | -- | -0.317 | 22.9 | 24.61 | 187 | -- | -- |
| 25.76 | 0.236 | 11.9 | -1.09 | 1.11 | -0.547 | -- | -0.0944 | -0.315 | 22.9 | 24.67 | 188 | -- | -- |
| 25.76 | 0.236 | 11.9 | -1.11 | 1.11 | -0.541 | -- | -- | -0.316 | 22.9 | 24.7 | 189 | -- | -- |
| 81.33 | 0.42 | 11.9 | -1.33 | -- | -1.01 | -- | 0.743 | -0.398 | -- | 30.1 | 795 | -- | -- |
| 29.21 | 0.253 | 11.9 | -0.991 | 1.07 | -- | -0.416 | -- | -0.215 | 22.7 | -- | -- | -- | -- |
| 29.92 | 0.256 | 11.9 | -0.974 | 1.07 | -- | -- | -- | -0.214 | 22.7 | -- | -- | -- | -- |
| 81.02 | 0.419 | 11.9 | -1.24 | -- | -1.05 | -- | -- | -0.419 | -- | 29.3 | 796 | -- | -- |
| 54.77 | 0.347 | 11.9 | -- | 1.08 | -0.108 | -- | -- | -0.119 | 22.7 | 23.6 | 68 | -- | -- |
| 100.95 | 0.469 | 11.8 | -0.953 | -- | -- | -- | -- | -0.208 | -- | -- | -- | -- | -- |
| 54.94 | 0.347 | 11.9 | -- | 1.07 | -- | -- | -- | -0.105 | 22.6 | -- | -- | -- | -- |
| 115.29 | 0.502 | 11.8 | -- | -- | 0.662 | -- | -- | 0.00889 | -- | 29.3 | 796 | -- | -- |
| 124.93 | 0.522 | 11.8 | -- | -- | -- | -- | -- | -0.102 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.73 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 21 | 8 |
| 7 | 21.22 | temperature | 20.0 | 90 | > th | dose independent | rect. | 21 | 8 |
| 35 | 22.12 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 17 | 14 |
| 66 | 22.42 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 100 | 22.83 | temperature | 20.0 | 90 | > th | dose independent | rect. | 9 | 20 |
| 106 | 22.86 | temperature | 30.0 | 270 | < th | dose dependent | sin | 10 | NA |
| 108 | 22.87 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 118 | 22.91 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 15 |
| 127 | 22.94 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 9 | 20 |
| 154 | 23.07 | temperature | 10.0 | 270 | > th | dose dependent | sin | 10 | NA |
| 179 | 23.20 | wind | 9.0 | 30 | < th | dose dependent | rect. | 21 | 8 |
| 215 | 23.36 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 21 | 8 |
| 264 | 23.51 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 282 | 23.57 | wind | 5.0 | 90 | < th | dose independent | rect. | 21 | 8 |
| 319 | 23.66 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 9 | 20 |
| 320 | 23.67 | humidity | 80.0 | 90 | > th | dose independent | rect. | 21 | 8 |
| 322 | 23.67 | wind | 9.0 | 270 | < th | dose dependent | rect. | 18 | 9 |
| 331 | 23.69 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 21 | 8 |
| 336 | 23.69 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 21 | 8 |
| 338 | 23.70 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 9 | 20 |
| 368 | 23.75 | temperature | 30.0 | 30 | < th | dose independent | rect. | 21 | 8 |
| 369 | 23.75 | humidity | 50.0 | 30 | > th | dose independent | rect. | 21 | 8 |
| 372 | 23.75 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 21 | 8 |
| 373 | 23.75 | radiation | 1.0 | 30 | < th | dose independent | rect. | 21 | 8 |
| 378 | 23.75 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 16 |
| 380 | 23.75 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 5 | 16 |
| 381 | 23.75 | radiation | 1.0 | 30 | < th | dose dependent | sin | 9 | NA |
| 383 | 23.75 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 21 | 8 |
| 403 | 23.77 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 21 | 8 |
| 429 | 23.81 | wind | 9.0 | 30 | < th | dose independent | rect. | 5 | 16 |
| 491 | 23.88 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 5 | 16 |
| 498 | 23.88 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 5 | 16 |
| 565 | 23.96 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 2 |
| 583 | 24.00 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 23 |
| 589 | 24.00 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 601 | 24.03 | radiation | 1.0 | 10 | < th | dose independent | sin | 9 | NA |
| 633 | 24.06 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 5 | 16 |
| 639 | 24.07 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 690 | 24.11 | temperature | 20.0 | 270 | < th | dose independent | rect. | 19 | 12 |
| 723 | 24.12 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 747 | 24.14 | temperature | 20.0 | 270 | > th | dose independent | sin | 11 | NA |
| 771 | 24.16 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 16 |
| 777 | 24.17 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 22 |
| 899 | 24.25 | wind | 3.0 | 30 | < th | dose independent | rect. | 18 | 11 |
| 921 | 24.26 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 928 | 24.27 | wind | 5.0 | 270 | < th | dose independent | rect. | 21 | 16 |
| 944 | 24.28 | wind | 7.0 | 270 | < th | dose dependent | rect. | 23 | 2 |
| 974 | 24.30 | wind | 9.0 | 270 | < th | dose dependent | rect. | 21 | 16 |
| 978 | 24.30 | wind | 9.0 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 989 | 24.32 | wind | 3.0 | 270 | < th | dose independent | rect. | 23 | 2 |