BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0852600 Os03g0852600|AK063101
         (206 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56830.1  | chr3:21042755-21043840 REVERSE LENGTH=231          130   4e-31
AT1G65420.1  | chr1:24297669-24298374 REVERSE LENGTH=198           94   6e-20

>AT3G56830.1 | chr3:21042755-21043840 REVERSE LENGTH=231
          Length = 230

 Score =  130 bits (328), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 72/154 (46%), Positives = 86/154 (55%), Gaps = 9/154 (5%)

Query: 44  LMRASPSFRTNSRQMQWSI--EAMTDDSADQSGD-------NNTRLFSAIQSFXXXXXXX 94
           L  A P    + R+M W+    ++  D  D +            RL  AIQ         
Sbjct: 39  LHPAQPLLVRHQRRMSWTTIKSSVGGDRFDPASGSSSNNSSRGLRLIKAIQVLRSKLLVK 98

Query: 95  XXXXXXXXXXXXXFFLIGFYCATAFATVIGQTGDWDILSAGLAVAIVEGIGALMYRASFA 154
                        F L+GFY ATAF+T IGQTGDWD+LSAGLAV +VE IGALMYRAS  
Sbjct: 99  IQEIKKDLPKKLFFLLVGFYSATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRASIP 158

Query: 155 FLGRIRKMITIFNYWKAGLTLGLFLDSFKYEVDE 188
            + ++R  IT+FNYWK GL LGLFLDSFKYEV E
Sbjct: 159 LINKMRSTITMFNYWKTGLALGLFLDSFKYEVYE 192



>AT1G65420.1 | chr1:24297669-24298374 REVERSE LENGTH=198
          Length = 197

 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 58/78 (74%), Gaps = 2/78 (2%)

Query: 108 FFLIGFYCATAFATVIGQTGDWDILSAGLAVAIVEGIGALMYR--ASFAFLGRIRKMITI 165
             L+GFY A A AT++GQTGDWD+L AG+ VA +EGIG LMY+  +S  F G+++  +  
Sbjct: 117 LLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSSSMFSGKLQSFVVF 176

Query: 166 FNYWKAGLTLGLFLDSFK 183
            N+WKAG+ LGLF+D+FK
Sbjct: 177 MNFWKAGVCLGLFVDAFK 194



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.328    0.138    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,278,250
Number of extensions: 99729
Number of successful extensions: 288
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 2
Length of query: 206
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 112
Effective length of database: 8,529,465
Effective search space: 955300080
Effective search space used: 955300080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 109 (46.6 bits)