Os03g0852300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Histone-fold domain containing protein.
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Os03g0852300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Histone-fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.97 | 0.443 | 7.45 | 1.49 | 1.61 | 0.917 | 0.534 | -1.11 | 0.284 | 18.5 | 25.61 | 11 | -- | -- |
| 89.4 | 0.44 | 7.43 | 1.6 | 1.61 | 0.827 | 0.474 | -- | 0.312 | 18.5 | 25.59 | 10 | -- | -- |
| 89.66 | 0.441 | 7.44 | 1.49 | 1.61 | 0.931 | -- | -0.94 | 0.292 | 18.5 | 25.68 | 10 | -- | -- |
| 89.96 | 0.442 | 7.43 | 1.59 | 1.61 | 0.848 | -- | -- | 0.313 | 18.5 | 25.6 | 10 | -- | -- |
| 173.16 | 0.613 | 7.45 | 1.3 | -- | 1.99 | -- | -1.12 | 0.146 | -- | 24.52 | 290 | -- | -- |
| 99.34 | 0.467 | 7.42 | 1.72 | 1.81 | -- | 0.724 | -- | 0.358 | 18 | -- | -- | -- | -- |
| 100.62 | 0.47 | 7.42 | 1.71 | 1.81 | -- | -- | -- | 0.361 | 18 | -- | -- | -- | -- |
| 173.95 | 0.614 | 7.43 | 1.37 | -- | 1.83 | -- | -- | 0.152 | -- | 24.4 | 294 | -- | -- |
| 153.19 | 0.576 | 7.49 | -- | 1.48 | 1.23 | -- | -- | 0.0585 | 19 | 24.21 | 18 | -- | -- |
| 270.33 | 0.768 | 7.39 | 1.66 | -- | -- | -- | -- | 0.319 | -- | -- | -- | -- | -- |
| 178 | 0.624 | 7.46 | -- | 1.78 | -- | -- | -- | 0.17 | 18 | -- | -- | -- | -- |
| 221.68 | 0.693 | 7.47 | -- | -- | 2.03 | -- | -- | -0.0268 | -- | 24.22 | 304 | -- | -- |
| 343.04 | 0.865 | 7.43 | -- | -- | -- | -- | -- | 0.135 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.74 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 11 |
| 8 | 83.88 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 43 | 85.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 11 |
| 45 | 85.46 | humidity | 80 | 720 | > th | dose dependent | rect. | 22 | 2 |
| 47 | 85.47 | temperature | 25 | 270 | < th | dose independent | sin | 4 | NA |
| 52 | 85.53 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 11 |
| 58 | 85.62 | temperature | 25 | 270 | > th | dose independent | sin | 4 | NA |
| 67 | 85.85 | temperature | 20 | 270 | > th | dose dependent | sin | 4 | NA |
| 93 | 86.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 123 | 86.48 | temperature | 25 | 270 | > th | dose independent | rect. | 3 | 8 |
| 125 | 86.49 | temperature | 25 | 270 | > th | dose independent | rect. | 3 | 12 |
| 159 | 86.66 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 195 | 86.89 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 244 | 87.15 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 6 |
| 257 | 87.21 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 300 | 87.39 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 2 |
| 419 | 87.85 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 7 |
| 447 | 87.93 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 16 |
| 497 | 88.09 | humidity | 90 | 720 | > th | dose independent | rect. | 22 | 2 |
| 506 | 88.10 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 555 | 88.21 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 1 |
| 650 | 88.45 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 4 |
| 670 | 88.52 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 13 |
| 746 | 88.69 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 1 |
| 755 | 88.70 | temperature | 25 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 923 | 88.99 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 982 | 89.09 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 23 |