BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0852300 Os03g0852300|AK103607
         (303 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G07980.1  | chr1:2473523-2474910 REVERSE LENGTH=207            102   4e-22

>AT1G07980.1 | chr1:2473523-2474910 REVERSE LENGTH=207
          Length = 206

 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 70/86 (81%)

Query: 206 FPMARVRQIMRAEDATIRPSNEAVFLINKATEIFLKRFADDAYRNALKDRKKSIVYDNLS 265
           FPM R+R+IMR++++  +   +AVFL+NKATE+F++RF+++AY +++KD+KK I Y +LS
Sbjct: 110 FPMNRIRRIMRSDNSAPQIMQDAVFLVNKATEMFIERFSEEAYDSSVKDKKKFIHYKHLS 169

Query: 266 TAVCNQKRYKFLSDFVPQKVTAEDAL 291
           + V N +RY+FL+D VP+K+ AE AL
Sbjct: 170 SVVSNDQRYEFLADSVPEKLKAEAAL 195



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.308    0.125    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,348,965
Number of extensions: 152131
Number of successful extensions: 350
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 351
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 205
Effective length of database: 8,419,801
Effective search space: 1726059205
Effective search space used: 1726059205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 111 (47.4 bits)