Os03g0850600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0850600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.72 | 0.224 | 14 | -0.129 | 1.1 | 0.564 | -0.0599 | -0.822 | -0.113 | 13.9 | 25.5 | 10 | -- | -- |
| 22.82 | 0.224 | 14 | -0.0395 | 1.1 | 0.512 | -0.16 | -- | -0.0898 | 13.9 | 25.5 | 10 | -- | -- |
| 22.6 | 0.223 | 14 | -0.138 | 1.1 | 0.584 | -- | -0.943 | -0.112 | 13.9 | 25.6 | 9 | -- | -- |
| 22.92 | 0.224 | 14 | -0.043 | 1.11 | 0.502 | -- | -- | -0.0901 | 13.9 | 25.5 | 9 | -- | -- |
| 68.59 | 0.386 | 14 | -0.466 | -- | 1.63 | -- | -1.92 | -0.294 | -- | 24.56 | 2 | -- | -- |
| 26.57 | 0.242 | 14 | 0.0295 | 1.28 | -- | -0.0317 | -- | -0.0614 | 14 | -- | -- | -- | -- |
| 26.58 | 0.241 | 14 | 0.0286 | 1.28 | -- | -- | -- | -0.0616 | 14 | -- | -- | -- | -- |
| 70.77 | 0.394 | 14 | -0.229 | -- | 1.52 | -- | -- | -0.229 | -- | 24.5 | 2 | -- | -- |
| 22.97 | 0.224 | 14 | -- | 1.11 | 0.491 | -- | -- | -0.0849 | 13.9 | 25.5 | 9 | -- | -- |
| 125.52 | 0.524 | 14 | -0.0248 | -- | -- | -- | -- | -0.0919 | -- | -- | -- | -- | -- |
| 26.6 | 0.241 | 14 | -- | 1.28 | -- | -- | -- | -0.0648 | 14 | -- | -- | -- | -- |
| 72.13 | 0.397 | 14 | -- | -- | 1.48 | -- | -- | -0.201 | -- | 24.5 | 2 | -- | -- |
| 125.53 | 0.523 | 14 | -- | -- | -- | -- | -- | -0.0891 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.98 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 10 | 20.47 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 9 |
| 39 | 21.04 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 48 | 21.16 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 18 |
| 50 | 21.17 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 15 |
| 54 | 21.18 | temperature | 25 | 90 | > th | dose dependent | sin | 2 | NA |
| 85 | 21.32 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 14 |
| 87 | 21.33 | temperature | 25 | 270 | > th | dose independent | sin | 2 | NA |
| 112 | 21.41 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 114 | 21.41 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 14 |
| 146 | 21.48 | temperature | 25 | 270 | < th | dose independent | sin | 2 | NA |
| 250 | 21.65 | temperature | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 258 | 21.67 | temperature | 30 | 270 | < th | dose dependent | sin | 2 | NA |
| 356 | 21.94 | temperature | 25 | 10 | > th | dose independent | rect. | 8 | 10 |
| 627 | 22.42 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 14 |
| 643 | 22.45 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 12 |
| 724 | 22.58 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 12 |
| 731 | 22.58 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 739 | 22.59 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 19 |
| 751 | 22.60 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 22 |
| 754 | 22.61 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 801 | 22.67 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 903 | 22.77 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 11 | 23 |
| 921 | 22.79 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 7 |
| 945 | 22.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 11 |
| 959 | 22.82 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 995 | 22.85 | temperature | 25 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 997 | 22.85 | temperature | 25 | 10 | > th | dose dependent | rect. | 5 | 23 |