BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0850600 Os03g0850600|AK067191
         (286 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G28140.1  | chr1:9833029-9834390 REVERSE LENGTH=281            265   2e-71

>AT1G28140.1 | chr1:9833029-9834390 REVERSE LENGTH=281
          Length = 280

 Score =  265 bits (677), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 131/226 (57%), Positives = 159/226 (70%)

Query: 56  NVYNGVYGPWTVEDSDVREVLLYRSGLVTXXXXXXXXXXXXXLPEGNAAGDAIRQXXXXX 115
            VY GVYGPWT++ +DV+EV+LYRSGLVT             LP  +   + I+Q     
Sbjct: 52  TVYKGVYGPWTIDQADVKEVILYRSGLVTAAASFVAASSAAFLPGDSWLSETIKQNHDLF 111

Query: 116 XXXXXXXXXXXXXXIHIYVTPIKRFLQALWVVGVVGSIGTYVAGAQPLDESLVGYVLDHP 175
                         IHIYVT IKR LQALW +G VGS  TY A A+P  ++LV YV+DHP
Sbjct: 112 YFVGASGLGLSLFLIHIYVTEIKRTLQALWALGFVGSFATYAALARPAGDNLVHYVVDHP 171

Query: 176 AALWFVGPTFAALTGLVFKEGLCYGKLEAGILTFVIPGLLLGHLSGLMDNGTKAGLLGVW 235
           +A+WFVGP FA+LTGLVFKEGLCYGKLEAG+LTF+IP +LLGHLSGLM++  K  LLG W
Sbjct: 172 SAVWFVGPLFASLTGLVFKEGLCYGKLEAGLLTFIIPSVLLGHLSGLMNDEVKLVLLGTW 231

Query: 236 MVLFTVFAARKFQQPIKDDIGDKSVFMFNALPEEEKKALIQKLEMQ 281
           M LF VFA RKF QPIKDDIGDKSVF F +L ++EKKA+++KLE +
Sbjct: 232 MALFLVFAGRKFTQPIKDDIGDKSVFTFMSLSDDEKKAIVEKLEQE 277



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.141    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,054,593
Number of extensions: 180759
Number of successful extensions: 324
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 188
Effective length of database: 8,419,801
Effective search space: 1582922588
Effective search space used: 1582922588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)