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Os03g0848300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Actin-related protein 2/3 complex subunit 4 (ARP2/3 complex 20 kDa subunit) (p20-ARC).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0162) R2 : 0.499
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.771 (0.0386) R2dC : 0.44 R2C : 0.427
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.243 (0.0341) R2dN8 : 0.0722 R2N8 : 0.0592
σ : 0.306
deviance : 42.68
__
_____
C
peak time of C : 0.286
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
27.55 0.247 11.2 -0.752 0.778 -0.613 0.319 1.3 0.0666 0.562 22.41 412 -- --
28.4 0.248 11.2 -0.711 0.78 -1.19 0.319 -- 0.0946 0.386 19.24 1950 -- --
27.81 0.246 11.2 -0.776 0.791 -0.62 -- 1.3 0.0614 0.537 22.73 349 -- --
28.67 0.249 11.2 -0.712 0.771 -1.22 -- -- 0.0945 0.373 19.29 1903 -- --
58.13 0.355 11.2 -0.928 -- -0.921 -- 1.15 -0.0643 -- 26.96 883 -- --
37.08 0.285 11.2 -0.433 0.778 -- 0.3 -- 0.195 0.362 -- -- -- --
37.47 0.287 11.2 -0.445 0.777 -- -- -- 0.194 0.317 -- -- -- --
59.67 0.36 11.2 -0.707 -- -0.986 -- -- -0.0148 -- 26.32 896 -- --
39.4 0.294 11.2 -- 0.801 -0.783 -- -- 0.219 0.304 19.29 1903 -- --
75.43 0.406 11.2 -0.419 -- -- -- -- 0.206 -- -- -- -- --
42.68 0.306 11.2 -- 0.771 -- -- -- 0.243 0.286 -- -- -- --
71.24 0.393 11.2 -- -- -0.691 -- -- 0.12 -- 26.3 877 -- --
80.06 0.418 11.2 -- -- -- -- -- 0.252 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.79 wind 9.0 43200 < th dose dependent rect. 22 9
2 25.80 wind 1.0 43200 > th dose dependent rect. 5 1
4 25.81 wind 1.0 43200 > th dose dependent rect. 22 9
12 25.92 wind 9.0 43200 < th dose dependent rect. 5 1
18 25.96 wind 9.0 43200 < th dose dependent rect. 4 3
29 26.04 wind 7.0 43200 > th dose dependent rect. 10 3
37 26.11 humidity 80.0 14400 > th dose independent rect. 13 1
39 26.12 wind 3.0 43200 > th dose independent rect. 5 1
40 26.12 wind 1.0 43200 > th dose dependent rect. 1 6
43 26.14 wind 9.0 43200 > th dose independent rect. 10 2
46 26.15 wind 3.0 43200 < th dose independent rect. 5 1
59 26.26 wind 9.0 43200 < th dose independent rect. 10 3
73 26.31 radiation 1.0 14400 < th dose dependent rect. 7 1
79 26.33 wind 9.0 43200 < th dose dependent rect. 1 1
88 26.35 radiation 1.0 14400 < th dose independent rect. 7 1
99 26.38 precipitation 0.1 14400 > th dose independent rect. 9 1
100 26.38 precipitation 0.1 14400 > th dose dependent rect. 9 1
103 26.39 humidity 80.0 14400 < th dose independent rect. 13 1
104 26.39 radiation 1.0 14400 > th dose independent rect. 7 1
108 26.40 wind 9.0 43200 < th dose independent rect. 21 17
120 26.45 precipitation 0.1 14400 < th dose independent rect. 9 1
121 26.45 wind 3.0 43200 > th dose independent rect. 23 8
122 26.45 precipitation 0.1 14400 > th dose independent rect. 6 8
125 26.45 precipitation 0.1 14400 < th dose dependent rect. 9 1
129 26.48 wind 3.0 43200 > th dose independent rect. 1 6
132 26.49 wind 3.0 43200 < th dose independent rect. 4 3
134 26.50 wind 3.0 43200 > th dose independent rect. 4 3
135 26.50 wind 9.0 43200 < th dose independent rect. 3 11
139 26.51 precipitation 0.1 14400 < th dose independent rect. 6 9
140 26.51 wind 9.0 43200 < th dose independent rect. 24 14
144 26.51 precipitation 0.1 14400 < th dose dependent rect. 6 9
158 26.55 wind 1.0 43200 > th dose dependent rect. 1 2
162 26.55 wind 1.0 43200 > th dose dependent rect. 23 14
163 26.56 wind 3.0 43200 < th dose independent rect. 23 8
167 26.56 wind 9.0 43200 < th dose dependent rect. 23 14
172 26.58 wind 3.0 43200 < th dose independent rect. 1 6
179 26.59 wind 1.0 43200 > th dose dependent rect. 1 12
185 26.60 wind 9.0 43200 > th dose independent rect. 21 17
197 26.62 wind 9.0 43200 < th dose independent rect. 7 7
202 26.62 wind 7.0 43200 > th dose dependent rect. 3 11
204 26.62 wind 9.0 43200 < th dose dependent rect. 1 12
227 26.65 wind 1.0 43200 > th dose dependent sin 8 NA
264 26.69 wind 9.0 43200 < th dose dependent sin 8 NA
266 26.70 wind 9.0 43200 < th dose independent sin 5 NA
277 26.70 humidity 90.0 14400 > th dose dependent rect. 1 21
280 26.71 precipitation 0.1 14400 > th dose independent rect. 7 3
282 26.71 wind 9.0 43200 > th dose independent rect. 3 11
283 26.71 wind 3.0 43200 > th dose independent rect. 1 12
284 26.71 precipitation 0.1 14400 > th dose dependent rect. 7 3
291 26.72 humidity 80.0 14400 > th dose independent rect. 10 5
305 26.72 humidity 90.0 14400 > th dose dependent rect. 7 22
310 26.73 wind 9.0 43200 < th dose independent rect. 19 19
329 26.75 wind 3.0 43200 > th dose independent rect. 23 14
337 26.76 precipitation 0.1 14400 < th dose independent rect. 7 3
338 26.76 precipitation 0.1 14400 > th dose independent rect. 5 5
340 26.76 precipitation 0.1 14400 < th dose dependent rect. 7 3
348 26.77 wind 9.0 43200 > th dose independent sin 5 NA
374 26.80 precipitation 0.1 14400 < th dose independent rect. 5 5
376 26.80 precipitation 0.1 14400 < th dose dependent rect. 5 5
390 26.81 wind 3.0 43200 < th dose independent rect. 1 12
391 26.81 wind 9.0 43200 > th dose independent rect. 19 19
415 26.84 wind 3.0 43200 > th dose independent rect. 1 3
420 26.84 wind 3.0 43200 < th dose independent rect. 23 14
466 26.87 precipitation 0.1 14400 > th dose dependent rect. 5 5
471 26.87 temperature 25.0 720 < th dose dependent rect. 11 16
500 26.90 temperature 20.0 14400 < th dose independent rect. 19 2
538 26.93 wind 3.0 43200 > th dose independent sin 7 NA
587 26.96 humidity 80.0 43200 < th dose independent rect. 3 4
620 26.98 humidity 80.0 43200 < th dose independent rect. 5 2
627 26.98 temperature 25.0 720 < th dose dependent sin 16 NA
634 26.99 humidity 80.0 14400 > th dose independent rect. 10 1
677 27.01 wind 7.0 43200 > th dose dependent sin 5 NA
684 27.01 humidity 90.0 14400 > th dose dependent rect. 13 21
687 27.01 humidity 90.0 14400 > th dose dependent rect. 16 22
689 27.01 humidity 90.0 14400 > th dose dependent rect. 18 23
691 27.02 wind 3.0 43200 < th dose independent sin 7 NA
706 27.02 humidity 90.0 14400 > th dose dependent rect. 15 20
707 27.02 humidity 90.0 14400 > th dose dependent rect. 18 20
723 27.03 humidity 80.0 14400 > th dose dependent rect. 12 3
774 27.05 humidity 90.0 14400 > th dose dependent no NA NA
835 27.08 humidity 80.0 43200 > th dose independent rect. 3 4
887 27.10 humidity 90.0 14400 > th dose dependent rect. 2 15
951 27.13 humidity 90.0 14400 > th dose dependent rect. 2 12
964 27.14 humidity 80.0 14400 > th dose dependent rect. 13 1