BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0848300 Os03g0848300|AK102089
         (169 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14147.2  | chr4:8154062-8156246 REVERSE LENGTH=177            273   2e-74

>AT4G14147.2 | chr4:8154062-8156246 REVERSE LENGTH=177
          Length = 176

 Score =  273 bits (699), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 138/176 (78%), Positives = 150/176 (85%), Gaps = 8/176 (4%)

Query: 1   MANTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEK 60
           MAN+LRLYL CI+NTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEK
Sbjct: 1   MANSLRLYLACIKNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEK 60

Query: 61  CLIETSINSIRISMKVKQADELENILAKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 120
           CLIETSINS+RIS+KVKQADELENIL KKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN
Sbjct: 61  CLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 120

Query: 121 YHCEDMHKHKLIDFIVQFMEDIDKE-------ISELKLSVNTRGRLVATEFLKQFI 169
           YHCE+M K KLIDFI+QFME   +E       +SE K      G ++ T  +KQ +
Sbjct: 121 YHCEEMQKQKLIDFIIQFMEARYRERNKGLEGVSEYKRKTRCYG-VLETVHVKQLL 175



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,233,273
Number of extensions: 118788
Number of successful extensions: 412
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 413
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 78
Effective length of database: 8,611,713
Effective search space: 671713614
Effective search space used: 671713614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 108 (46.2 bits)