Os03g0842700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Vacuolar sorting protein 9 domain containing protein.
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Os03g0842700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Vacuolar sorting protein 9 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.98 | 0.262 | 9.5 | -0.505 | 0.0294 | -0.622 | 0.51 | 1.78 | 0.228 | 2.03 | 25.81 | 14 | -- | -- |
| 31.8 | 0.265 | 9.52 | -0.687 | 0.0454 | -0.486 | 0.298 | -- | 0.182 | 1.51 | 25.81 | 14 | -- | -- |
| 31.75 | 0.264 | 9.51 | -0.587 | 0.0256 | -0.6 | -- | 1.07 | 0.208 | 0.822 | 25.82 | 17 | -- | -- |
| 32.11 | 0.266 | 9.52 | -0.693 | 0.0355 | -0.52 | -- | -- | 0.183 | 0.729 | 25.7 | 10 | -- | -- |
| 31.78 | 0.264 | 9.51 | -0.58 | -- | -0.624 | -- | 1.11 | 0.21 | -- | 25.82 | 17 | -- | -- |
| 35.27 | 0.278 | 9.53 | -0.754 | 0.214 | -- | 0.45 | -- | 0.16 | 2.49 | -- | -- | -- | -- |
| 36 | 0.281 | 9.53 | -0.766 | 0.215 | -- | -- | -- | 0.158 | 2.5 | -- | -- | -- | -- |
| 32.17 | 0.265 | 9.52 | -0.688 | -- | -0.55 | -- | -- | 0.185 | -- | 25.7 | 10 | -- | -- |
| 44.31 | 0.312 | 9.5 | -- | 0.0482 | -0.692 | -- | -- | 0.266 | 16.5 | 25.7 | 10 | -- | -- |
| 38.72 | 0.291 | 9.53 | -0.757 | -- | -- | -- | -- | 0.163 | -- | -- | -- | -- | -- |
| 51.47 | 0.336 | 9.51 | -- | 0.2 | -- | -- | -- | 0.243 | 2.45 | -- | -- | -- | -- |
| 44.4 | 0.311 | 9.5 | -- | -- | -0.654 | -- | -- | 0.264 | -- | 25.7 | 10 | -- | -- |
| 53.83 | 0.342 | 9.51 | -- | -- | -- | -- | -- | 0.247 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.91 | temperature | 25 | 90 | > th | dose dependent | sin | 2 | NA |
| 2 | 29.95 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 22 |
| 4 | 30.01 | temperature | 25 | 90 | > th | dose dependent | rect. | 6 | 10 |
| 30 | 30.22 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 186 | 30.90 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 6 |
| 200 | 30.98 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 3 |
| 208 | 31.01 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 24 | 19 |
| 212 | 31.03 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 15 |
| 213 | 31.04 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 311 | 31.18 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 14 | 18 |
| 337 | 31.22 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 1 |
| 427 | 31.37 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 7 |
| 431 | 31.37 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 432 | 31.38 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 9 |
| 462 | 31.41 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 9 |
| 464 | 31.41 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 558 | 31.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 563 | 31.52 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 569 | 31.53 | temperature | 10 | 90 | > th | dose dependent | sin | 1 | NA |
| 622 | 31.58 | temperature | 30 | 270 | < th | dose dependent | sin | 2 | NA |
| 623 | 31.58 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 629 | 31.59 | temperature | 25 | 270 | > th | dose independent | sin | 3 | NA |
| 767 | 31.71 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 5 |
| 770 | 31.71 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 17 |
| 785 | 31.72 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 19 |
| 821 | 31.75 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 14 | 5 |
| 863 | 31.79 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 24 | 8 |
| 912 | 31.82 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 11 |
| 949 | 31.86 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 12 |