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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0839800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.82 (0.0686) R2 : 0.141
β1 : -1.17 (0.252) R2dD : 0.0424 R2D : 0.0125
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.47 (0.21) R2dE : 0.102 R2E : 0.0907
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.326 (0.148) R2dN8 : 0.0155 R2N8 : 0.0157
σ : 1.28
deviance : 755.24
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 31.14
memory length : 726
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.6
open length of G : 1.75

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
739 1.28 2.85 8.05 0.0911 -7.83 2.43 87.3 -0.369 18.4 31.2 820 17.5 0.75
827.09 1.35 3.85 -0.968 0.235 1.08 -1.71 -- -0.537 6.43 31.2 820 17.5 0.75
753.39 1.28 2.86 7.9 0.0993 -7.68 -- 85.6 -0.364 16.7 31.36 819 17.5 2.45
761.92 1.29 3.82 -1.18 0.121 1.3 -- -- -0.371 5.94 31.61 1096 17.6 1.35
753.4 1.28 2.87 7.69 -- -7.46 -- 83.1 -0.37 -- 31.53 850 17.5 0.311
829.49 1.35 3.86 -0.954 0.195 -- -1.79 -- -0.544 6.56 -- -- -- --
835.61 1.35 3.86 -0.987 0.26 -- -- -- -0.541 3.77 -- -- -- --
755.24 1.28 3.82 -1.17 -- 1.47 -- -- -0.326 -- 31.14 726 17.6 1.75
798.28 1.32 3.79 -- 0.102 1.19 -- -- -0.275 6.79 32 1099 17.6 2.48
839.34 1.35 3.86 -0.976 -- -- -- -- -0.535 -- -- -- -- --
861.26 1.37 3.83 -- 0.241 -- -- -- -0.432 3.81 -- -- -- --
789.94 1.31 3.76 -- -- 1.35 -- -- -0.221 -- 32.22 726 17.7 6.61
864.45 1.37 3.83 -- -- -- -- -- -0.426 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 745.37 temperature 30 720 > th dose dependent rect. 18 1
15 745.96 humidity 50 1440 < th dose independent rect. 16 1
16 746.09 humidity 50 1440 < th dose dependent rect. 16 1
18 748.92 humidity 60 720 < th dose independent rect. 18 1
19 748.93 humidity 60 720 < th dose dependent rect. 18 1
61 753.00 humidity 70 720 > th dose independent rect. 18 13
62 753.04 humidity 50 1440 > th dose independent rect. 16 1
104 755.70 radiation 1 720 > th dose dependent rect. 18 1
116 756.94 temperature 30 720 > th dose independent rect. 18 1
130 756.96 temperature 30 720 < th dose independent rect. 17 14
162 758.27 radiation 1 720 > th dose independent rect. 18 11
163 758.55 temperature 30 720 < th dose independent rect. 18 8
179 759.02 radiation 1 720 > th dose independent rect. 18 1
191 759.88 temperature 20 270 > th dose dependent rect. 14 18
192 759.92 temperature 10 270 > th dose dependent rect. 14 5
194 760.01 humidity 90 90 < th dose dependent rect. 17 2
223 760.11 humidity 60 1440 > th dose independent rect. 17 10
226 760.18 humidity 50 1440 > th dose independent rect. 16 8
228 760.22 humidity 70 720 > th dose independent rect. 19 8
264 760.31 humidity 60 1440 > th dose independent rect. 17 5
290 760.43 humidity 50 1440 > th dose independent rect. 16 17
313 760.57 temperature 20 90 > th dose dependent rect. 16 17
345 761.08 temperature 25 270 > th dose independent rect. 14 6
365 761.91 humidity 50 270 > th dose independent rect. 9 15
423 762.69 temperature 15 90 > th dose dependent rect. 17 2
440 763.71 temperature 10 270 > th dose dependent rect. 14 15
498 763.98 wind 1 10 > th dose independent rect. 20 21
587 764.59 humidity 50 1440 < th dose independent sin 11 NA
598 764.77 radiation 1 270 < th dose dependent sin 14 NA
611 765.34 wind 5 43200 > th dose dependent rect. 2 15
614 765.46 wind 7 43200 < th dose independent rect. 21 20
615 765.47 wind 5 43200 > th dose dependent rect. 23 18
621 765.65 wind 7 43200 > th dose independent rect. 21 20
636 765.90 atmosphere 1015 90 < th dose dependent rect. 17 2
648 766.01 humidity 50 1440 > th dose independent sin 12 NA
700 766.40 radiation 10 14400 > th dose independent rect. 5 1
712 766.40 wind 7 43200 < th dose independent rect. 2 15
716 766.42 temperature 20 90 > th dose dependent rect. 17 12
722 766.48 humidity 90 90 < th dose independent rect. 17 2
762 766.62 temperature 30 43200 > th dose independent rect. 18 1
789 766.74 wind 7 43200 > th dose independent rect. 2 15
795 766.79 wind 7 43200 < th dose independent sin 3 NA
797 766.80 wind 7 43200 > th dose independent sin 3 NA
813 766.97 wind 1 90 < th dose independent rect. 4 1
863 767.22 temperature 30 14400 < th dose independent rect. 18 9
871 767.30 temperature 30 43200 > th dose dependent rect. 18 1
886 767.31 radiation 1 270 > th dose independent rect. 14 15
891 767.33 wind 1 90 < th dose dependent rect. 4 1
895 767.35 radiation 1 270 > th dose independent rect. 14 5
946 767.51 temperature 30 14400 < th dose independent rect. 18 7
949 767.52 wind 5 43200 > th dose dependent sin 1 NA
963 767.62 wind 7 43200 > th dose dependent rect. 19 22
990 767.87 temperature 30 14400 < th dose independent rect. 18 14
996 767.91 atmosphere 995 270 > th dose dependent rect. 24 9