BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0839800 Os03g0839800|AK110581
         (140 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21695.1  | chr1:7619132-7619785 FORWARD LENGTH=218             48   2e-06
AT1G77400.1  | chr1:29085881-29086579 FORWARD LENGTH=233           46   7e-06

>AT1G21695.1 | chr1:7619132-7619785 FORWARD LENGTH=218
          Length = 217

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 18/25 (72%), Positives = 23/25 (92%)

Query: 4  DESFKRPGTIPFKWELQPGVPKQQP 28
          D+SFKRPG +PFKWE++PGVPK +P
Sbjct: 5  DDSFKRPGAVPFKWEIRPGVPKTRP 29



>AT1G77400.1 | chr1:29085881-29086579 FORWARD LENGTH=233
          Length = 232

 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 18/25 (72%), Positives = 23/25 (92%)

Query: 3  LDESFKRPGTIPFKWELQPGVPKQQ 27
          +D+SFKRPGTIPF WE++PGVPK +
Sbjct: 6  VDDSFKRPGTIPFSWEIRPGVPKTR 30



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,903,991
Number of extensions: 37883
Number of successful extensions: 105
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 2
Length of query: 140
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 52
Effective length of database: 8,693,961
Effective search space: 452085972
Effective search space used: 452085972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 106 (45.4 bits)