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Os03g0831500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phosphoribosylformylglycinamidine cyclo-ligase, chloroplast/mitochondrial precursor (EC 6.3.3.1) (AIRS) (Phosphoribosyl-aminoimidazole synthetase) (AIR synthase) (VUpur5).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 102.82 | 0.476 | 10.8 | 0.59 | 1.97 | 1.13 | 1.31 | 2.25 | -0.195 | 19 | 24.46 | 141 | -- | -- |
| 108.16 | 0.484 | 10.8 | 0.59 | 1.94 | 0.862 | 1.19 | -- | -0.189 | 18.9 | 16.57 | 155 | -- | -- |
| 107.02 | 0.482 | 10.8 | 0.572 | 1.96 | 1.09 | -- | 2.07 | -0.191 | 18.9 | 24.82 | 151 | -- | -- |
| 111.6 | 0.492 | 10.8 | 0.57 | 1.96 | 0.872 | -- | -- | -0.189 | 19 | 14.91 | 160 | -- | -- |
| 176.99 | 0.62 | 10.8 | 0.525 | -- | 2.09 | -- | 1.07 | -0.329 | -- | -4.236e-05 | 716 | -- | -- |
| 119.95 | 0.513 | 10.8 | 0.588 | 2.03 | -- | 1.34 | -- | -0.146 | 18.3 | -- | -- | -- | -- |
| 124.39 | 0.522 | 10.8 | 0.572 | 2.03 | -- | -- | -- | -0.142 | 18.3 | -- | -- | -- | -- |
| 177.45 | 0.62 | 10.8 | 0.41 | -- | 2.11 | -- | -- | -0.389 | -- | -33.85 | 733 | -- | -- |
| 120.06 | 0.51 | 10.8 | -- | 1.93 | 0.879 | -- | -- | -0.247 | 19.1 | 14.5 | 170 | -- | -- |
| 338.92 | 0.86 | 10.7 | 0.518 | -- | -- | -- | -- | -0.185 | -- | -- | -- | -- | -- |
| 133.02 | 0.54 | 10.8 | -- | 2.03 | -- | -- | -- | -0.205 | 18.3 | -- | -- | -- | -- |
| 181.88 | 0.628 | 10.8 | -- | -- | 2.13 | -- | -- | -0.436 | -- | -34.98 | 734 | -- | -- |
| 346 | 0.868 | 10.7 | -- | -- | -- | -- | -- | -0.243 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.99 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 3 | 96.27 | temperature | 25 | 30 | > th | dose independent | rect. | 1 | 8 |
| 6 | 96.71 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 10 |
| 15 | 97.75 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 4 |
| 21 | 98.13 | temperature | 20 | 30 | > th | dose dependent | rect. | 4 | 5 |
| 36 | 99.46 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 14 |
| 42 | 99.70 | radiation | 40 | 10 | < th | dose independent | rect. | 6 | 14 |
| 45 | 99.80 | temperature | 15 | 90 | > th | dose dependent | rect. | 17 | 16 |
| 52 | 100.03 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 18 |
| 62 | 100.34 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 19 | 8 |
| 63 | 100.35 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 64 | 100.35 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 16 |
| 65 | 100.36 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 8 |
| 69 | 100.61 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 70 | 100.68 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 6 |
| 77 | 100.76 | temperature | 25 | 10 | > th | dose independent | rect. | 23 | 10 |
| 78 | 100.77 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 95 | 101.04 | radiation | 40 | 90 | < th | dose independent | rect. | 5 | 14 |
| 106 | 101.20 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 113 | 101.29 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 20 | 10 |
| 116 | 101.32 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 3 |
| 136 | 101.51 | radiation | 40 | 10 | < th | dose independent | rect. | 6 | 16 |
| 147 | 101.67 | humidity | 80 | 270 | > th | dose independent | rect. | 3 | 6 |
| 148 | 101.67 | humidity | 80 | 270 | < th | dose independent | rect. | 22 | 16 |
| 149 | 101.68 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 159 | 101.78 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 161 | 101.79 | temperature | 30 | 10 | < th | dose dependent | rect. | 20 | 10 |
| 163 | 101.80 | temperature | 20 | 30 | > th | dose independent | rect. | 17 | 16 |
| 164 | 101.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 5 |
| 177 | 101.86 | radiation | 1 | 90 | < th | dose dependent | sin | 11 | NA |
| 191 | 102.04 | radiation | 1 | 270 | > th | dose dependent | rect. | 4 | 10 |
| 215 | 102.16 | radiation | 1 | 90 | > th | dose independent | rect. | 17 | 16 |
| 233 | 102.22 | radiation | 1 | 90 | > th | dose dependent | rect. | 9 | 8 |
| 270 | 102.43 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 275 | 102.45 | radiation | 1 | 90 | > th | dose independent | sin | 11 | NA |
| 276 | 102.45 | radiation | 1 | 90 | < th | dose independent | sin | 11 | NA |
| 277 | 102.46 | radiation | 10 | 270 | < th | dose independent | rect. | 4 | 3 |
| 278 | 102.47 | temperature | 20 | 30 | > th | dose independent | rect. | 15 | 18 |
| 286 | 102.56 | radiation | 30 | 270 | > th | dose dependent | sin | 9 | NA |
| 317 | 102.71 | radiation | 10 | 270 | > th | dose dependent | sin | 7 | NA |
| 325 | 102.74 | radiation | 1 | 270 | > th | dose dependent | sin | 5 | NA |
| 344 | 102.83 | radiation | 1 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 385 | 102.93 | radiation | 40 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 387 | 102.95 | radiation | 40 | 90 | < th | dose independent | rect. | 3 | 23 |
| 408 | 102.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 8 |
| 418 | 103.03 | radiation | 40 | 270 | < th | dose independent | rect. | 10 | 22 |
| 486 | 103.11 | wind | 5 | 270 | < th | dose independent | rect. | 4 | 3 |
| 542 | 103.21 | radiation | 40 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 566 | 103.35 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 22 | 8 |
| 570 | 103.38 | wind | 7 | 270 | < th | dose independent | rect. | 8 | 19 |
| 571 | 103.38 | wind | 9 | 270 | < th | dose independent | rect. | 7 | 21 |
| 598 | 103.49 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 630 | 103.52 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 6 |
| 635 | 103.54 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 20 | 10 |
| 648 | 103.59 | radiation | 10 | 90 | > th | dose dependent | sin | 0 | NA |
| 660 | 103.62 | radiation | 20 | 90 | > th | dose dependent | rect. | 16 | 23 |
| 680 | 103.66 | radiation | 40 | 10 | < th | dose independent | rect. | 4 | 20 |
| 682 | 103.66 | humidity | 60 | 270 | > th | dose dependent | rect. | 3 | 8 |
| 752 | 103.88 | radiation | 20 | 90 | > th | dose dependent | no | NA | NA |
| 859 | 103.89 | radiation | 1 | 90 | > th | dose independent | rect. | 5 | 4 |
| 888 | 103.93 | humidity | 90 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 891 | 103.94 | humidity | 80 | 270 | < th | dose independent | rect. | 8 | 6 |
| 965 | 104.05 | radiation | 40 | 270 | > th | dose independent | sin | 9 | NA |
| 991 | 104.08 | radiation | 40 | 270 | < th | dose independent | sin | 7 | NA |
| 999 | 104.11 | wind | 5 | 10 | < th | dose independent | rect. | 6 | 3 |
