BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0831500 Os03g0831500|AK101211
         (398 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G55010.1  | chr3:20386818-20388549 FORWARD LENGTH=390          493   e-140

>AT3G55010.1 | chr3:20386818-20388549 FORWARD LENGTH=390
          Length = 389

 Score =  493 bits (1269), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 253/326 (77%), Positives = 288/326 (88%), Gaps = 4/326 (1%)

Query: 73  MTYKGAGVDIDAGTELVRRIGRLAPAIGGFGGLFPFGDQFLVAGTDGVGTKLKLAFETGI 132
           + YK +GVDIDAG ELV+RI ++AP IGGFGGLFP GD +LVAGTDGVGTKLKLAFETGI
Sbjct: 66  LNYKDSGVDIDAGAELVKRIAKMAPGIGGFGGLFPLGDSYLVAGTDGVGTKLKLAFETGI 125

Query: 133 HDTIGIDLVAMSVNDIVTSGAKPLFFLDYYATSKLDVDLAEKVIKGIVDGCRQSDCALLG 192
           HDTIGIDLVAMSVNDI+TSGAKPLFFLDY+ATS+LDVDLAEKVIKGIV+GCRQS+CALLG
Sbjct: 126 HDTIGIDLVAMSVNDIITSGAKPLFFLDYFATSRLDVDLAEKVIKGIVEGCRQSECALLG 185

Query: 193 GETAEMPDFYKEGEYDLSGFAVGAVKKDKVIDGKNIMEGDIIIGLPSSGVHSNGFSLARR 252
           GETAEMPDFY EGEYDLSGFAVG VKK  VI+GKNI+ GD++IGLPSSGVHSNGFSL RR
Sbjct: 186 GETAEMPDFYAEGEYDLSGFAVGIVKKTSVINGKNIVAGDVLIGLPSSGVHSNGFSLVRR 245

Query: 253 VLEKSGLSLNDQLPRNDGMITTVGEALMAPTVIYVKQVLEIINKGGVKGIAHITGGGFTD 312
           VL +S LSL D LP   G  +T+G+ALMAPTVIYVKQVL++I KGGVKG+AHITGGGFTD
Sbjct: 246 VLARSNLSLKDALP---GGSSTLGDALMAPTVIYVKQVLDMIEKGGVKGLAHITGGGFTD 302

Query: 313 NIPRVFPSGLGAKIFTAAWEVPPVFRWIQEVGKIEDAEMRRTFNMGIGMVLVVSKEAADG 372
           NIPRVFP GLGA I T AWE+PP+F+WIQ+ G+IED+EMRRTFN+GIGMV+VVS EAA  
Sbjct: 303 NIPRVFPDGLGAVIHTDAWELPPLFKWIQQTGRIEDSEMRRTFNLGIGMVMVVSPEAASR 362

Query: 373 ILEGTHGPNH-AYRIGEVISGEGVHY 397
           ILE     ++ AYR+GEV++GEGV Y
Sbjct: 363 ILEEVKNGDYVAYRVGEVVNGEGVSY 388



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.141    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,640,908
Number of extensions: 332130
Number of successful extensions: 718
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 716
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 297
Effective length of database: 8,337,553
Effective search space: 2476253241
Effective search space used: 2476253241
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)