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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0829200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Soluble epoxide hydrolase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.27 (0.0454) R2 : 0.49
β1 : -1.72 (0.17) R2dD : 0.133 R2D : 0.0782
β2 : 1.56 (0.123) R2dC : 0.243 R2C : 0.264
β3 : -0.778 (0.308) R2dE : 0.0126 R2E : -0.0905
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -10.7 (1.06) R2dD*E : 0.157 R2D*E : 0.179
γ1 : -0.103 (0.0966) R2dN8 : 0.00206 R2N8 : -0.00533
σ : 0.827
deviance : 315.16
__
_____
C
peak time of C : 1.79
E
wheather : radiation
threshold : 0.0004352
memory length : 646
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.9
open length of G : 6.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
305.5 0.821 4.25 -1.73 1.52 -0.524 2.4 -12.9 -0.0819 2.03 -0.01455 686 17.9 6.73
364.52 0.889 4.45 -1.32 1.75 0.685 -0.574 -- -0.254 1.56 9.004 3862 17.6 8.18
315.16 0.827 4.27 -1.72 1.56 -0.778 -- -10.7 -0.103 1.79 0.0004352 646 17.9 6.4
336 0.854 4.36 -0.146 1.7 2.3 -- -- -0.092 1.59 8.983 4716 17.8 5.07
421.69 0.956 4.26 -1.57 -- 1.1 -- -10.6 0.037 -- 0.08605 823 17.8 6.8
390.85 0.927 4.38 -1.53 1.67 -- -0.556 -- -0.213 1.68 -- -- -- --
392.07 0.927 4.38 -1.51 1.67 -- -- -- -0.21 1.7 -- -- -- --
389.99 0.92 4.36 -1.2 -- 1.83 -- -- -0.143 -- -10.06 5059 17.4 6.1
325.9 0.841 4.37 -- 1.56 2.35 -- -- 0.154 1.78 8.334 3803 17.8 4.07
562.74 1.11 4.36 -1.44 -- -- -- -- -0.172 -- -- -- -- --
452.15 0.995 4.34 -- 1.65 -- -- -- -0.0416 1.68 -- -- -- --
396.79 0.928 4.33 -- -- 2.88 -- -- -0.247 -- -1.319 5109 17.9 5
617.57 1.16 4.32 -- -- -- -- -- -0.0123 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 323.16 radiation 1.0 14400 < th dose dependent rect. 19 10
2 323.54 radiation 1.0 720 > th dose dependent rect. 17 2
14 323.79 radiation 20.0 43200 < th dose independent rect. 17 12
16 323.91 radiation 40.0 43200 < th dose independent rect. 15 1
18 323.93 radiation 40.0 43200 < th dose independent rect. 15 14
19 323.94 radiation 20.0 43200 < th dose independent rect. 17 1
24 324.00 radiation 40.0 43200 < th dose independent rect. 15 3
33 324.13 radiation 40.0 43200 < th dose independent rect. 15 9
40 324.40 radiation 20.0 43200 < th dose independent rect. 17 7
57 325.08 radiation 10.0 43200 > th dose dependent rect. 17 1
94 326.69 precipitation 0.1 43200 > th dose dependent rect. 13 1
108 328.13 radiation 40.0 43200 < th dose independent rect. 1 7
109 328.25 humidity 90.0 43200 < th dose independent rect. 24 1
110 328.27 radiation 40.0 43200 < th dose independent rect. 23 9
112 328.31 radiation 40.0 43200 < th dose dependent rect. 1 4
113 328.32 radiation 30.0 43200 > th dose dependent rect. 15 17
115 328.38 temperature 15.0 43200 > th dose independent rect. 24 1
123 328.68 radiation 40.0 43200 < th dose independent rect. 7 1
128 328.71 temperature 15.0 43200 < th dose dependent rect. 1 1
134 328.76 temperature 25.0 720 > th dose dependent rect. 16 9
145 329.04 radiation 1.0 43200 < th dose dependent rect. 7 4
146 329.11 humidity 80.0 43200 < th dose dependent rect. 4 4
147 329.17 radiation 1.0 43200 < th dose dependent rect. 7 2
151 329.28 radiation 10.0 43200 < th dose independent rect. 1 4
153 329.29 radiation 20.0 43200 > th dose dependent rect. 16 15
154 329.32 radiation 30.0 43200 > th dose dependent rect. 15 2
174 329.50 temperature 15.0 14400 > th dose independent rect. 2 1
175 329.52 radiation 40.0 43200 < th dose dependent rect. 23 6
178 329.68 radiation 10.0 43200 < th dose independent rect. 23 6
201 330.01 temperature 15.0 14400 < th dose independent rect. 24 3
215 330.37 radiation 10.0 4320 < th dose dependent rect. 18 1
222 330.53 temperature 15.0 43200 < th dose independent rect. 24 1
259 330.82 radiation 1.0 43200 > th dose independent rect. 4 1
269 330.82 radiation 1.0 43200 > th dose dependent rect. 4 1
286 331.00 radiation 1.0 43200 > th dose independent rect. 10 1
287 331.01 radiation 1.0 43200 < th dose independent rect. 10 1
288 331.01 radiation 1.0 43200 < th dose dependent rect. 10 1
290 331.05 wind 5.0 720 > th dose independent rect. 17 2
292 331.07 precipitation 0.1 43200 > th dose independent rect. 13 1
297 331.14 temperature 15.0 14400 < th dose independent rect. 2 1
298 331.14 radiation 30.0 43200 > th dose dependent rect. 7 1
322 331.30 radiation 10.0 4320 < th dose dependent rect. 18 6
343 331.63 radiation 1.0 43200 < th dose independent rect. 8 4
344 331.64 precipitation 0.1 43200 < th dose independent rect. 13 1
345 331.64 precipitation 0.1 43200 < th dose dependent rect. 13 1
354 331.72 radiation 1.0 43200 > th dose independent rect. 8 4
371 332.04 humidity 90.0 43200 < th dose independent rect. 23 4
378 332.10 wind 3.0 720 > th dose dependent rect. 17 2
382 332.12 humidity 80.0 43200 > th dose dependent rect. 14 15
388 332.25 humidity 70.0 43200 < th dose independent rect. 20 12
406 332.47 humidity 90.0 43200 > th dose independent rect. 24 3
408 332.48 wind 1.0 43200 < th dose independent rect. 19 10
428 332.81 wind 9.0 14400 > th dose dependent rect. 6 5
430 332.85 temperature 25.0 720 > th dose dependent sin 13 NA
440 332.97 humidity 80.0 43200 > th dose dependent rect. 16 12
446 333.04 humidity 70.0 43200 > th dose independent rect. 20 11
471 333.42 wind 3.0 43200 < th dose dependent rect. 1 3
473 333.43 wind 9.0 14400 > th dose dependent rect. 10 1
476 333.45 temperature 20.0 270 > th dose dependent rect. 20 8
542 334.01 temperature 20.0 43200 < th dose dependent rect. 18 5
552 334.09 radiation 10.0 720 < th dose independent rect. 15 8
554 334.10 wind 1.0 43200 < th dose dependent rect. 17 13
561 334.18 wind 1.0 43200 < th dose dependent rect. 19 11
571 334.32 temperature 25.0 720 < th dose independent rect. 19 1
574 334.32 radiation 10.0 43200 < th dose dependent rect. 18 12
587 334.41 humidity 90.0 43200 < th dose independent rect. 2 1
588 334.41 humidity 90.0 43200 > th dose dependent rect. 2 1
603 334.52 radiation 1.0 4320 > th dose independent rect. 18 11
613 334.58 radiation 40.0 43200 < th dose dependent rect. 18 12
624 334.67 humidity 80.0 43200 > th dose dependent sin 14 NA
639 334.76 wind 1.0 43200 < th dose dependent rect. 22 7
646 334.79 humidity 80.0 43200 > th dose dependent rect. 21 4
647 334.80 wind 1.0 43200 > th dose independent rect. 15 4
651 334.85 wind 3.0 43200 < th dose independent rect. 8 1
652 334.85 radiation 1.0 1440 < th dose dependent rect. 18 23
704 335.17 humidity 70.0 43200 < th dose dependent rect. 22 10
705 335.18 temperature 15.0 43200 < th dose independent rect. 11 1
713 335.20 wind 1.0 43200 < th dose dependent rect. 20 1
738 335.38 radiation 1.0 720 < th dose dependent sin 22 NA
747 335.45 wind 1.0 43200 > th dose independent rect. 20 9
749 335.47 radiation 1.0 720 < th dose dependent rect. 4 15
756 335.52 humidity 80.0 43200 > th dose dependent rect. 14 1
762 335.54 humidity 60.0 43200 < th dose independent rect. 18 15
768 335.60 temperature 20.0 43200 > th dose independent rect. 14 1
779 335.70 humidity 80.0 43200 > th dose independent rect. 13 1
782 335.72 humidity 60.0 43200 > th dose independent rect. 18 15
790 335.76 temperature 20.0 43200 < th dose independent rect. 14 1
809 335.84 temperature 15.0 43200 > th dose independent rect. 23 13
813 335.86 radiation 1.0 4320 < th dose dependent rect. 16 1
824 335.89 temperature 20.0 43200 < th dose dependent sin 18 NA
826 335.90 humidity 90.0 14400 > th dose independent rect. 5 2
829 335.91 wind 3.0 43200 > th dose independent rect. 8 1
830 335.93 wind 1.0 43200 < th dose independent rect. 15 4
847 336.00 humidity 90.0 14400 < th dose independent rect. 5 2
854 336.02 temperature 15.0 14400 < th dose independent rect. 24 12
856 336.03 temperature 25.0 720 < th dose independent rect. 17 6
907 336.19 humidity 70.0 43200 < th dose dependent rect. 20 12
911 336.22 temperature 15.0 14400 < th dose independent rect. 22 14
966 336.44 wind 1.0 14400 < th dose dependent rect. 4 2
972 336.46 radiation 30.0 14400 > th dose independent rect. 15 2