Os03g0826800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0826800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 587.84 | 1.14 | 7.54 | 2.16 | 7.76 | 2.53 | 1.43 | -5.45 | 1.49 | 19.8 | 19.9 | 264 | 22.9 | 4.37 |
| 628.17 | 1.17 | 7.5 | 2.56 | 7.71 | 2.57 | 1.57 | -- | 1.58 | 19.7 | 19.8 | 234 | 22.9 | 4.48 |
| 593 | 1.13 | 7.53 | 2.11 | 7.75 | 2.37 | -- | -5.93 | 1.48 | 19.8 | 20.15 | 245 | 22.9 | 4.87 |
| 636.67 | 1.18 | 7.46 | 2.56 | 7.54 | 2.36 | -- | -- | 1.62 | 19.8 | 20 | 189 | 23.1 | 4.24 |
| 2249 | 2.21 | 7.29 | 1.08 | -- | 7.56 | -- | 0.818 | 2.3 | -- | 22.78 | 476 | 14.9 | 3.49 |
| 741.75 | 1.28 | 7.45 | 2.78 | 7.23 | -- | 1.31 | -- | 1.67 | 20.4 | -- | -- | -- | -- |
| 747.21 | 1.28 | 7.45 | 2.73 | 7.23 | -- | -- | -- | 1.67 | 20.4 | -- | -- | -- | -- |
| 842.94 | 1.35 | 7.26 | 1.67 | -- | 7.58 | -- | -- | 1.55 | -- | 18.59 | 672 | 10.2 | 9.33 |
| 810.02 | 1.33 | 7.46 | -- | 7.6 | 2.51 | -- | -- | 1.61 | 19.8 | 19.4 | 189 | 23 | 4.53 |
| 3664.83 | 2.83 | 7.26 | 2.7 | -- | -- | -- | -- | 1.6 | -- | -- | -- | -- | -- |
| 944.26 | 1.44 | 7.52 | -- | 7.22 | -- | -- | -- | 1.37 | 20.5 | -- | -- | -- | -- |
| 953.69 | 1.44 | 7.28 | -- | -- | 7.37 | -- | -- | 1.43 | -- | 18.7 | 687 | 10.3 | 9.12 |
| 3856.96 | 2.9 | 7.33 | -- | -- | -- | -- | -- | 1.3 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 588.47 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 4 |
| 4 | 592.56 | temperature | 20 | 10 | > th | dose independent | rect. | 1 | 4 |
| 6 | 598.73 | humidity | 80 | 90 | > th | dose independent | rect. | 24 | 17 |
| 11 | 600.79 | humidity | 60 | 10 | > th | dose dependent | rect. | 24 | 17 |
| 22 | 604.70 | humidity | 80 | 90 | > th | dose independent | rect. | 24 | 19 |
| 23 | 604.71 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 25 | 605.45 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 11 |
| 30 | 606.63 | radiation | 10 | 10 | < th | dose dependent | rect. | 24 | 17 |
| 36 | 607.36 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 39 | 607.47 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 9 |
| 41 | 607.55 | radiation | 20 | 90 | < th | dose dependent | rect. | 24 | 17 |
| 43 | 607.61 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 5 |
| 47 | 607.85 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 9 |
| 59 | 608.60 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 20 |
| 73 | 609.41 | humidity | 80 | 1440 | < th | dose dependent | rect. | 19 | 18 |
| 91 | 610.40 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 108 | 611.06 | humidity | 60 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 109 | 611.08 | radiation | 1 | 270 | < th | dose independent | rect. | 22 | 19 |
| 116 | 611.18 | humidity | 70 | 1440 | < th | dose independent | rect. | 19 | 18 |
| 117 | 611.21 | radiation | 10 | 270 | < th | dose dependent | rect. | 22 | 18 |
| 141 | 612.22 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 14 |
| 147 | 612.47 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 148 | 612.49 | humidity | 50 | 1440 | > th | dose dependent | rect. | 3 | 11 |
| 155 | 612.73 | radiation | 10 | 270 | < th | dose dependent | rect. | 22 | 16 |
| 184 | 613.56 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 4 |
| 217 | 614.26 | humidity | 90 | 1440 | < th | dose dependent | sin | 4 | NA |
| 218 | 614.29 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 252 | 615.28 | humidity | 80 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 263 | 615.59 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 292 | 616.25 | humidity | 80 | 1440 | < th | dose dependent | sin | 7 | NA |
| 308 | 616.51 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 383 | 617.97 | radiation | 1 | 10 | < th | dose independent | rect. | 1 | 15 |
| 492 | 619.58 | humidity | 70 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 501 | 619.75 | humidity | 70 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 532 | 619.86 | humidity | 50 | 1440 | > th | dose dependent | sin | 3 | NA |
| 536 | 619.91 | humidity | 70 | 1440 | < th | dose independent | no | NA | NA |
| 669 | 620.96 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 19 |
| 693 | 621.11 | humidity | 70 | 1440 | > th | dose independent | rect. | 8 | 13 |
| 706 | 621.15 | humidity | 70 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 735 | 621.25 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 787 | 621.67 | humidity | 70 | 1440 | > th | dose independent | sin | 9 | NA |
| 794 | 621.79 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 23 |
| 969 | 623.70 | radiation | 1 | 10 | < th | dose independent | rect. | 1 | 13 |