BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0826800 Os03g0826800|AK065702
         (143 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G19530.1  | chr1:6763976-6764686 FORWARD LENGTH=118             70   5e-13

>AT1G19530.1 | chr1:6763976-6764686 FORWARD LENGTH=118
          Length = 117

 Score = 69.7 bits (169), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 65/139 (46%), Gaps = 27/139 (19%)

Query: 1   MGSLMAGWDSPVLGDENRVLARRNKSLTREEVEAFWKQHGGEMXXXXXXXXXXXXXXXRS 60
           MGSLM+GWDS V   ++    RR KSLTREE++ FWK                      S
Sbjct: 1   MGSLMSGWDSRVRDPKS---VRRCKSLTREEIDTFWKTKKKNEEEEHVQAF--------S 49

Query: 61  APVSRSKAHASSPRGGRIDPATRVEGFFPHDDAAAAESPSKSHDWWTRSNWAFLNEPPQE 120
             V++  A + +     +D                 E+ SKS  WW ++ WAFLNEP +E
Sbjct: 50  KLVTQEGAQSQAKEKKSVDDLF--------------ENQSKSSGWWRKTYWAFLNEPREE 95

Query: 121 EIAGKAQNYAPQFHVARIA 139
           E  G+  NY  QF VA IA
Sbjct: 96  E--GRPNNYVSQFKVAHIA 112



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.127    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,070,794
Number of extensions: 108579
Number of successful extensions: 187
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 54
Effective length of database: 8,666,545
Effective search space: 467993430
Effective search space used: 467993430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 106 (45.4 bits)