Os03g0826700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SAM (and some other nucleotide) binding motif domain containing protein.
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Os03g0826700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SAM (and some other nucleotide) binding motif domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.18 | 0.271 | 10 | -0.328 | 1.27 | -0.605 | -0.0974 | 0.575 | -0.0723 | 16.5 | 20.75 | 4081 | -- | -- |
| 33.64 | 0.27 | 9.99 | -0.195 | 1.27 | -0.66 | -0.0642 | -- | -0.049 | 16.5 | 21.2 | 4072 | -- | -- |
| 33.2 | 0.268 | 10 | -0.326 | 1.27 | -0.605 | -- | 0.565 | -0.072 | 16.5 | 20.74 | 4080 | -- | -- |
| 33.65 | 0.27 | 9.99 | -0.194 | 1.27 | -0.658 | -- | -- | -0.0481 | 16.5 | 21.19 | 4074 | -- | -- |
| 117.36 | 0.505 | 10 | -0.419 | -- | -0.513 | -- | 0.774 | -0.119 | -- | 21.1 | 6200 | -- | -- |
| 43.41 | 0.309 | 9.94 | 0.204 | 1.24 | -- | -0.0197 | -- | 0.161 | 16.5 | -- | -- | -- | -- |
| 43.41 | 0.309 | 9.94 | 0.204 | 1.24 | -- | -- | -- | 0.161 | 16.5 | -- | -- | -- | -- |
| 117.55 | 0.505 | 9.97 | -0.24 | -- | -0.625 | -- | -- | -0.0687 | -- | 21 | 4755 | -- | -- |
| 34.28 | 0.273 | 9.98 | -- | 1.27 | -0.558 | -- | -- | -0.00498 | 16.5 | 21.21 | 4046 | -- | -- |
| 126.05 | 0.525 | 9.93 | 0.156 | -- | -- | -- | -- | 0.129 | -- | -- | -- | -- | -- |
| 44.51 | 0.312 | 9.94 | -- | 1.24 | -- | -- | -- | 0.139 | 16.5 | -- | -- | -- | -- |
| 118.04 | 0.508 | 9.95 | -- | -- | -0.418 | -- | -- | 0.0411 | -- | 20.63 | 3332 | -- | -- |
| 126.69 | 0.525 | 9.93 | -- | -- | -- | -- | -- | 0.111 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.27 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 7 |
| 3 | 32.32 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 3 |
| 4 | 32.33 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 3 |
| 21 | 32.42 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 7 |
| 42 | 32.51 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 11 |
| 58 | 32.57 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |
| 91 | 32.66 | temperature | 20 | 4320 | > th | dose independent | sin | 14 | NA |
| 114 | 32.72 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 166 | 32.91 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 216 | 33.06 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 241 | 33.17 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 261 | 33.24 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 266 | 33.25 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 3 |
| 389 | 33.41 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 391 | 33.41 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 484 | 33.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 515 | 33.51 | temperature | 20 | 4320 | > th | dose dependent | sin | 17 | NA |
| 546 | 33.53 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 562 | 33.54 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 570 | 33.54 | wind | 1 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 605 | 33.56 | temperature | 15 | 4320 | > th | dose dependent | sin | 14 | NA |
| 754 | 33.63 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 763 | 33.64 | temperature | 30 | 4320 | < th | dose dependent | sin | 15 | NA |
| 911 | 33.70 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 22 |
| 929 | 33.70 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 972 | 33.72 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |