FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0822400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.49 (0.0702) R2 : 0.287
β1 : -2.82 (0.259) R2dD : 0.203 R2D : 0.104
β2 : 1.45 (0.197) R2dC : 0.123 R2C : -0.0304
β3 : 2.24 (0.295) R2dE : 0.133 R2E : -0.107
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.11 (0.155) R2dN8 : 0.115 R2N8 : -0.00762
σ : 1.3
deviance : 782.88
__
_____
C
peak time of C : 12.3
E
wheather : temperature
threshold : 17.32
memory length : 125
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16.4
open length of G : 16.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
763.04 1.3 4.59 -3.74 1.17 2.47 -1.93 -6.81 -1.35 12.6 20.64 117 16.5 16.6
780.19 1.3 4.51 -2.89 1.32 2.3 -1.53 -- -1.18 12.3 18.47 131 16.3 16.8
775.78 1.3 4.58 -3.64 1.19 2.49 -- -5.67 -1.32 11.9 20.81 112 16.5 16.5
782.88 1.3 4.49 -2.82 1.45 2.24 -- -- -1.11 12.3 17.32 125 16.4 16.6
840.42 1.35 4.57 -3.37 -- 1.86 -- -4.87 -1.17 -- 21.7 76 16.6 17.3
864.94 1.38 4.44 -2.47 0.626 -- -2.06 -- -0.765 13.9 -- -- -- --
878.31 1.39 4.44 -2.53 0.65 -- -- -- -0.78 12.5 -- -- -- --
853.8 1.36 4.5 -2.76 -- 1.47 -- -- -1 -- 21.49 8 16.8 17.7
991.44 1.47 4.41 -- 1.2 1.69 -- -- -0.723 12.3 18.64 120 16.5 16.6
904.79 1.41 4.45 -2.56 -- -- -- -- -0.791 -- -- -- -- --
1047.61 1.51 4.38 -- 0.688 -- -- -- -0.498 12.7 -- -- -- --
1049.04 1.51 4.41 -- -- 1.07 -- -- -0.619 -- 21.8 21 17.5 16.6
1077.27 1.53 4.39 -- -- -- -- -- -0.508 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 768.07 temperature 20 90 > th dose dependent rect. 17 16
3 774.84 radiation 30 4320 > th dose dependent rect. 7 1
20 777.23 humidity 60 1440 < th dose dependent rect. 16 1
21 777.36 temperature 10 270 > th dose dependent rect. 14 19
28 779.88 radiation 30 14400 < th dose independent rect. 16 13
29 779.98 radiation 30 14400 < th dose independent rect. 16 11
36 780.85 radiation 30 14400 < th dose independent rect. 16 9
39 781.67 radiation 30 1440 < th dose independent rect. 16 16
40 781.67 radiation 1 270 < th dose dependent rect. 19 19
42 781.75 radiation 20 1440 > th dose independent rect. 16 15
43 781.94 radiation 30 14400 < th dose independent rect. 16 2
44 782.17 radiation 30 4320 < th dose independent rect. 21 11
46 782.23 radiation 1 270 < th dose dependent rect. 5 23
49 782.51 radiation 30 4320 < th dose independent rect. 19 13
58 783.20 radiation 30 14400 < th dose independent rect. 16 4
60 783.30 wind 9 14400 > th dose dependent rect. 17 22
72 784.00 radiation 30 4320 < th dose independent rect. 6 2
73 784.12 radiation 20 1440 > th dose independent rect. 16 1
87 784.30 radiation 30 4320 < th dose independent rect. 2 6
89 784.65 radiation 30 4320 < th dose independent rect. 4 4
94 785.13 wind 9 14400 < th dose independent rect. 18 21
95 785.15 radiation 1 270 > th dose independent rect. 15 18
101 785.56 wind 5 14400 > th dose dependent rect. 11 1
108 786.07 humidity 60 1440 < th dose independent rect. 16 2
110 786.23 radiation 1 1440 > th dose dependent rect. 18 1
120 786.30 radiation 10 1440 < th dose dependent rect. 18 9
121 786.36 wind 7 14400 > th dose independent rect. 24 16
124 786.63 wind 9 14400 > th dose independent rect. 18 21
127 786.82 wind 7 14400 > th dose independent rect. 5 11
133 787.19 temperature 20 90 > th dose dependent rect. 2 7
144 787.49 atmosphere 995 270 > th dose dependent rect. 24 9
147 787.70 wind 7 14400 < th dose independent rect. 5 11
149 787.72 wind 7 14400 < th dose independent rect. 24 16
151 787.80 temperature 20 90 > th dose dependent rect. 24 9
157 788.10 humidity 50 1440 > th dose independent rect. 16 10
160 788.12 wind 9 14400 > th dose dependent rect. 13 23
163 788.17 humidity 50 1440 > th dose independent rect. 16 12
165 788.23 humidity 80 43200 > th dose independent rect. 21 2
172 788.39 radiation 40 1440 < th dose dependent rect. 16 1
177 788.48 wind 7 14400 > th dose dependent rect. 24 16
182 788.55 humidity 60 1440 > th dose independent rect. 16 2
185 788.60 atmosphere 1005 30 > th dose independent rect. 4 6
189 788.73 temperature 20 30 > th dose independent rect. 4 16
190 788.78 humidity 50 1440 > th dose independent rect. 16 5
192 788.81 radiation 1 1440 > th dose independent rect. 18 1
215 789.15 wind 5 14400 > th dose independent rect. 11 1
216 789.15 humidity 80 43200 < th dose independent rect. 21 2
217 789.17 atmosphere 1005 30 > th dose independent rect. 2 8
220 789.21 wind 9 14400 > th dose dependent rect. 9 14
223 789.22 humidity 50 1440 > th dose independent rect. 16 16
227 789.31 humidity 50 1440 < th dose independent rect. 16 18
228 789.32 wind 9 14400 > th dose dependent rect. 9 19
231 789.34 wind 9 14400 > th dose dependent rect. 9 17
255 789.36 wind 9 14400 < th dose independent rect. 20 18
264 789.43 radiation 10 1440 < th dose dependent rect. 18 7
267 789.46 wind 7 14400 > th dose independent sin 3 NA
268 789.47 radiation 1 1440 < th dose independent rect. 18 9
274 789.52 humidity 50 1440 < th dose dependent rect. 16 18
294 789.58 radiation 10 1440 > th dose dependent rect. 16 1
299 789.70 wind 5 14400 < th dose independent rect. 11 1
302 789.74 wind 7 14400 > th dose dependent sin 4 NA
303 789.74 wind 9 14400 > th dose dependent rect. 22 23
311 789.87 temperature 10 270 > th dose dependent rect. 24 9
312 789.87 wind 9 14400 > th dose dependent rect. 24 23
329 790.09 wind 7 14400 > th dose dependent rect. 5 11
330 790.09 wind 9 14400 > th dose dependent rect. 3 20
337 790.14 radiation 1 1440 < th dose independent rect. 18 7
349 790.25 wind 9 14400 > th dose dependent no NA NA
396 790.57 wind 7 14400 < th dose independent sin 3 NA
425 791.03 radiation 1 1440 < th dose independent rect. 18 1
442 791.09 temperature 20 10 > th dose dependent rect. 2 8
449 791.17 humidity 70 1440 < th dose dependent rect. 16 15
469 791.34 radiation 20 1440 < th dose independent rect. 16 1
532 791.89 radiation 1 270 > th dose independent sin 12 NA
538 791.94 radiation 10 14400 > th dose independent rect. 5 1
555 792.02 humidity 80 10 < th dose independent rect. 17 19
563 792.13 radiation 20 1440 < th dose independent rect. 16 13
570 792.23 radiation 20 1440 < th dose independent rect. 16 11
571 792.23 humidity 50 30 > th dose dependent rect. 10 18
595 792.46 temperature 20 10 > th dose dependent rect. 24 10
620 792.67 radiation 20 1440 < th dose independent rect. 16 9
626 792.69 wind 9 14400 > th dose dependent sin 18 NA
676 793.03 temperature 25 720 > th dose dependent rect. 21 1
692 793.23 radiation 20 1440 < th dose independent rect. 16 4
698 793.27 wind 9 14400 > th dose dependent rect. 13 10
704 793.30 radiation 1 270 < th dose dependent sin 12 NA
720 793.47 wind 9 14400 > th dose dependent rect. 13 15
738 793.50 radiation 40 1440 < th dose dependent rect. 16 11
739 793.50 wind 9 14400 > th dose dependent rect. 13 13
750 793.57 wind 5 43200 > th dose dependent rect. 13 16
757 793.69 radiation 10 1440 < th dose dependent rect. 18 1
761 793.73 wind 9 14400 < th dose independent rect. 5 16
763 793.74 radiation 1 270 < th dose independent rect. 19 19
773 793.87 radiation 40 1440 < th dose dependent rect. 16 9
775 793.90 atmosphere 1000 10 > th dose dependent rect. 2 8
787 793.99 wind 9 14400 < th dose independent rect. 5 18
802 794.02 wind 9 14400 < th dose dependent rect. 11 2
807 794.09 wind 9 14400 < th dose independent rect. 3 18
821 794.17 wind 9 14400 < th dose independent rect. 7 14
822 794.22 wind 9 14400 < th dose independent rect. 1 20
823 794.22 humidity 80 10 < th dose independent rect. 15 21
832 794.24 wind 9 14400 < th dose independent rect. 13 23
861 794.31 humidity 50 270 > th dose independent rect. 10 14
877 794.33 temperature 30 720 < th dose independent rect. 17 14
888 794.36 wind 9 14400 < th dose independent rect. 7 16
889 794.36 wind 5 43200 > th dose independent rect. 12 17
903 794.44 wind 9 14400 > th dose independent rect. 13 23
963 794.70 wind 9 14400 < th dose independent rect. 5 21
968 794.76 wind 9 14400 < th dose independent rect. 5 23
990 794.86 wind 5 43200 < th dose independent rect. 12 17