Os03g0815200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Methylenetetrahydrofolate reductase (EC 1.5.1.20).
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Os03g0815200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Methylenetetrahydrofolate reductase (EC 1.5.1.20).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 111.43 | 0.496 | 12.1 | 0.406 | 0.605 | -0.649 | 0.37 | -3.08 | 0.713 | 11.3 | 24.66 | 363 | -- | -- |
| 113.83 | 0.497 | 12 | 0.797 | 0.597 | -0.898 | 0.384 | -- | 0.757 | 11.1 | 26.67 | 380 | -- | -- |
| 111.86 | 0.493 | 12.1 | 0.407 | 0.586 | -0.608 | -- | -3.21 | 0.702 | 11.1 | 24.96 | 400 | -- | -- |
| 114.13 | 0.498 | 12 | 0.823 | 0.612 | -0.956 | -- | -- | 0.761 | 11.2 | 26.7 | 370 | -- | -- |
| 125.1 | 0.521 | 12.1 | 0.471 | -- | -0.902 | -- | -2.66 | 0.738 | -- | 24.44 | 693 | -- | -- |
| 129.81 | 0.534 | 12 | 0.667 | 0.745 | -- | 0.461 | -- | 0.742 | 9.16 | -- | -- | -- | -- |
| 130.56 | 0.535 | 12 | 0.683 | 0.744 | -- | -- | -- | 0.743 | 9.14 | -- | -- | -- | -- |
| 127.54 | 0.526 | 12 | 0.922 | -- | -1.11 | -- | -- | 0.853 | -- | 24.37 | 703 | -- | -- |
| 131.24 | 0.534 | 12.1 | -- | 0.612 | -0.797 | -- | -- | 0.664 | 10.7 | 27.56 | 370 | -- | -- |
| 162.55 | 0.596 | 12.1 | 0.681 | -- | -- | -- | -- | 0.747 | -- | -- | -- | -- | -- |
| 142.86 | 0.559 | 12 | -- | 0.744 | -- | -- | -- | 0.667 | 9.08 | -- | -- | -- | -- |
| 148.51 | 0.568 | 12.1 | -- | -- | -0.947 | -- | -- | 0.718 | -- | 25 | 661 | -- | -- |
| 174.8 | 0.617 | 12.1 | -- | -- | -- | -- | -- | 0.671 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.73 | temperature | 25 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 5 | 109.25 | temperature | 25 | 720 | > th | dose dependent | sin | 7 | NA |
| 22 | 110.14 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 30 | 110.40 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 22 |
| 42 | 110.77 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 92 | 111.72 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 2 |
| 94 | 111.73 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 20 |
| 112 | 111.92 | temperature | 25 | 720 | > th | dose independent | rect. | 4 | 5 |
| 115 | 111.97 | temperature | 25 | 720 | > th | dose independent | rect. | 3 | 7 |
| 152 | 112.23 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 153 | 112.24 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 154 | 112.25 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 214 | 112.42 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 13 |
| 236 | 112.48 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 13 |
| 253 | 112.54 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 333 | 112.75 | temperature | 25 | 4320 | > th | dose independent | sin | 6 | NA |
| 337 | 112.75 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 22 |
| 352 | 112.80 | temperature | 30 | 720 | < th | dose independent | rect. | 4 | 8 |
| 380 | 112.84 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 23 |
| 391 | 112.88 | temperature | 25 | 4320 | < th | dose independent | sin | 6 | NA |
| 426 | 112.97 | temperature | 30 | 720 | < th | dose independent | rect. | 20 | 16 |
| 428 | 112.98 | wind | 7 | 720 | > th | dose independent | sin | 8 | NA |
| 440 | 113.01 | temperature | 25 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 457 | 113.06 | temperature | 30 | 720 | < th | dose independent | sin | 8 | NA |
| 490 | 113.12 | temperature | 25 | 4320 | > th | dose dependent | rect. | 2 | 5 |
| 503 | 113.14 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 3 |
| 534 | 113.19 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 553 | 113.22 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 22 |
| 557 | 113.22 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 18 |
| 574 | 113.25 | temperature | 30 | 270 | > th | dose independent | rect. | 15 | 22 |
| 672 | 113.37 | temperature | 30 | 720 | > th | dose independent | sin | 9 | NA |
| 736 | 113.45 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 4 |
| 742 | 113.46 | wind | 7 | 720 | < th | dose independent | sin | 8 | NA |
| 767 | 113.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 17 |
| 784 | 113.50 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 847 | 113.58 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 859 | 113.59 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 11 |
| 892 | 113.63 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 21 |
| 906 | 113.65 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 21 |
| 965 | 113.73 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 19 |
| 982 | 113.75 | radiation | 40 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 983 | 113.75 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 21 |
| 994 | 113.76 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 21 |