BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0815200 Os03g0815200|AK121351
(594 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G44160.1 | chr2:18262301-18265185 FORWARD LENGTH=595 1008 0.0
AT3G59970.3 | chr3:22151303-22154323 FORWARD LENGTH=593 1000 0.0
>AT2G44160.1 | chr2:18262301-18265185 FORWARD LENGTH=595
Length = 594
Score = 1008 bits (2606), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/594 (78%), Positives = 526/594 (88%)
Query: 1 MKVIEKIQEAAADGRTVFSFEYFPPKTEEGLDNLFERMDRMVAHGPNFCDITWGAGGSTA 60
MKVI+KIQ A +G+T FSFE+FPPKTE+G+DNLFERMDRMVA+GP FCDITWGAGGSTA
Sbjct: 1 MKVIDKIQSLADEGKTAFSFEFFPPKTEDGVDNLFERMDRMVAYGPTFCDITWGAGGSTA 60
Query: 61 DLTLEIANRMQNMVCVETMMHLTCTNMPVEKIDDALTTIKSNGIQNVLALRGDPPHGQDK 120
DLTL+IA+RMQN+VCVE+MMHLTCTNMPVEKID AL TI+SNGIQNVLALRGDPPHGQDK
Sbjct: 61 DLTLDIASRMQNVVCVESMMHLTCTNMPVEKIDHALETIRSNGIQNVLALRGDPPHGQDK 120
Query: 121 FVQVAGGFACALDLVQHIRAKYGDYFGITVAGYPEAHPDAIQSTEGATPEAYSNDLAYLK 180
FVQV GGF CALDLV HIR+KYGDYFGITVAGYPEAHPD I A+ EAY +DL YLK
Sbjct: 121 FVQVEGGFDCALDLVNHIRSKYGDYFGITVAGYPEAHPDVIGENGLASNEAYQSDLEYLK 180
Query: 181 QKVDAGADLIITQLFYDTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTK 240
+K+DAGADLI+TQLFYDTDIFLKFVNDCRQIGI+CPIVPGIMPINNY+GFLRMTGFCKTK
Sbjct: 181 KKIDAGADLIVTQLFYDTDIFLKFVNDCRQIGISCPIVPGIMPINNYRGFLRMTGFCKTK 240
Query: 241 IPAEITAALEPIKDNEEAVKAYGIHLGTEMCKKILATGIKTLHLYTLNMEKSALGILMNL 300
IP E+ AALEPIKDNEEAVKAYGIHLGTEMCKK+LA G+K+LHLYTLNMEKSAL ILMNL
Sbjct: 241 IPVEVMAALEPIKDNEEAVKAYGIHLGTEMCKKMLAHGVKSLHLYTLNMEKSALAILMNL 300
Query: 301 GLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYISRTLGWDQYPHGRWGDSRNP 360
G+I+ESKISRSLPWR P NVFR KEDVRPIFWANRPKSYISRT GW+ +P GRWGDSR+
Sbjct: 301 GMIDESKISRSLPWRRPANVFRTKEDVRPIFWANRPKSYISRTKGWEDFPQGRWGDSRSA 360
Query: 361 SYGALTDYQFTRPRGRGKKLQEEWAVPVKSVEDINERFMNFCQGKLTSSPWSELDGLQPE 420
SYGAL+D+QF+RPR R KKLQ+EW VP+KSVEDI E+F C G L SSPWSELDGLQPE
Sbjct: 361 SYGALSDHQFSRPRARDKKLQQEWVVPLKSVEDIQEKFKELCLGNLKSSPWSELDGLQPE 420
Query: 421 TKIIDDQLVKINQKGFLTINSQPAVNGERSDSTSVGWGGPGGYVYQKAYLEFFCSKEKLD 480
T+II++QL+K+N KGFLTINSQP+VN ERSDS +VGWGGP GYVYQKAYLEFFCSKEKLD
Sbjct: 421 TRIINEQLIKVNSKGFLTINSQPSVNAERSDSPTVGWGGPVGYVYQKAYLEFFCSKEKLD 480
Query: 481 QLIEKSKAFPSLTYIAVNKDGESFSNIPTNAVNAVTWGVFPGKEIVQPTVVDSASFMVWK 540
++EK KA PS+TY+AVNK + SN VNAVTWGVFP KEI+QPT+VD ASF VWK
Sbjct: 481 AVVEKCKALPSITYMAVNKGEQWVSNTAQADVNAVTWGVFPAKEIIQPTIVDPASFNVWK 540
Query: 541 DEAFEIWSKGWACLFPEGDSSREILDKVQKSYFLVSLVDNDYINGDLFAAFKEI 594
DEAFE WS+ WA L+PE D SR +L++V+ SY+LVSLV+NDYINGD+FA F ++
Sbjct: 541 DEAFETWSRSWANLYPEADPSRNLLEEVKNSYYLVSLVENDYINGDIFAVFADL 594
>AT3G59970.3 | chr3:22151303-22154323 FORWARD LENGTH=593
Length = 592
Score = 1000 bits (2585), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/591 (77%), Positives = 525/591 (88%)
Query: 1 MKVIEKIQEAAADGRTVFSFEYFPPKTEEGLDNLFERMDRMVAHGPNFCDITWGAGGSTA 60
MKV++KI+ G+T FSFE+FPPKTE+G++NLFERMDR+V++GP FCDITWGAGGSTA
Sbjct: 1 MKVVDKIKSVTEQGQTAFSFEFFPPKTEDGVENLFERMDRLVSYGPTFCDITWGAGGSTA 60
Query: 61 DLTLEIANRMQNMVCVETMMHLTCTNMPVEKIDDALTTIKSNGIQNVLALRGDPPHGQDK 120
DLTLEIA+RMQN++CVETMMHLTCTNMP+EKID AL TI+SNGIQNVLALRGDPPHGQDK
Sbjct: 61 DLTLEIASRMQNVICVETMMHLTCTNMPIEKIDHALETIRSNGIQNVLALRGDPPHGQDK 120
Query: 121 FVQVAGGFACALDLVQHIRAKYGDYFGITVAGYPEAHPDAIQSTEGATPEAYSNDLAYLK 180
FVQV GGFACALDLV HIR+KYGDYFGITVAGYPEAHPD I++ ATPE+Y +DLAYLK
Sbjct: 121 FVQVEGGFACALDLVNHIRSKYGDYFGITVAGYPEAHPDVIEADGLATPESYQSDLAYLK 180
Query: 181 QKVDAGADLIITQLFYDTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTK 240
+KVDAGADLI+TQLFYDTDIFLKFVNDCRQIGI CPIVPGIMPI+NYKGFLRM GFCKTK
Sbjct: 181 KKVDAGADLIVTQLFYDTDIFLKFVNDCRQIGINCPIVPGIMPISNYKGFLRMAGFCKTK 240
Query: 241 IPAEITAALEPIKDNEEAVKAYGIHLGTEMCKKILATGIKTLHLYTLNMEKSALGILMNL 300
IPAE+TAALEPIKDN+EAVKAYGIH TEMCKKILA GI +LHLYTLN++KSA+GILMNL
Sbjct: 241 IPAELTAALEPIKDNDEAVKAYGIHFATEMCKKILAHGITSLHLYTLNVDKSAIGILMNL 300
Query: 301 GLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYISRTLGWDQYPHGRWGDSRNP 360
GLI+ESKISRSLPWR P NVFR KEDVRPIFWANRPKSYISRT GW+ +PHGRWGDS +
Sbjct: 301 GLIDESKISRSLPWRRPANVFRTKEDVRPIFWANRPKSYISRTKGWNDFPHGRWGDSHSA 360
Query: 361 SYGALTDYQFTRPRGRGKKLQEEWAVPVKSVEDINERFMNFCQGKLTSSPWSELDGLQPE 420
+Y L+DYQF RP+GR KKLQ+EW VP+KS+ED+ E+F C G L SSPWSELDGLQPE
Sbjct: 361 AYSTLSDYQFARPKGRDKKLQQEWVVPLKSIEDVQEKFKELCIGNLKSSPWSELDGLQPE 420
Query: 421 TKIIDDQLVKINQKGFLTINSQPAVNGERSDSTSVGWGGPGGYVYQKAYLEFFCSKEKLD 480
TKII++QL KIN GFLTINSQP+VN +SDS ++GWGGPGGYVYQKAYLEFFCSK+KLD
Sbjct: 421 TKIINEQLGKINSNGFLTINSQPSVNAAKSDSPAIGWGGPGGYVYQKAYLEFFCSKDKLD 480
Query: 481 QLIEKSKAFPSLTYIAVNKDGESFSNIPTNAVNAVTWGVFPGKEIVQPTVVDSASFMVWK 540
L+EKSKAFPS+TY+AVNK SN + VNAVTWGVFP KE++QPT+VD ASF VWK
Sbjct: 481 TLVEKSKAFPSITYMAVNKSENWVSNTGESDVNAVTWGVFPAKEVIQPTIVDPASFKVWK 540
Query: 541 DEAFEIWSKGWACLFPEGDSSREILDKVQKSYFLVSLVDNDYINGDLFAAF 591
DEAFEIWS+ WA L+PE D SR++L++V+ SY+LVSLVDN+YINGD+F+ F
Sbjct: 541 DEAFEIWSRSWANLYPEDDPSRKLLEEVKNSYYLVSLVDNNYINGDIFSVF 591
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,795,311
Number of extensions: 612191
Number of successful extensions: 1240
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1240
Number of HSP's successfully gapped: 2
Length of query: 594
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 490
Effective length of database: 8,255,305
Effective search space: 4045099450
Effective search space used: 4045099450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)