Os03g0811400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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Os03g0811400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 202.61 | 0.669 | 9.21 | 1.33 | 3.09 | -1.99 | 0.311 | 3.28 | -0.855 | 20.3 | 15.89 | 6 | -- | -- |
| 211.86 | 0.678 | 9.27 | 0.868 | 3.08 | -1.94 | -0.0671 | -- | -0.997 | 20.3 | 15.3 | 2 | -- | -- |
| 202.8 | 0.663 | 9.21 | 1.3 | 3.09 | -1.99 | -- | 3.14 | -0.86 | 20.3 | 15.76 | 3 | -- | -- |
| 211.78 | 0.678 | 9.27 | 0.846 | 3.1 | -1.98 | -- | -- | -0.99 | 20.2 | 15.3 | 2 | -- | -- |
| 727.72 | 1.26 | 9.1 | 1.5 | -- | -2.17 | -- | 3.96 | -0.812 | -- | 17.35 | 3 | -- | -- |
| 252.22 | 0.745 | 9.33 | 0.44 | 3.15 | -- | -0.239 | -- | -1.28 | 21 | -- | -- | -- | -- |
| 252.41 | 0.744 | 9.33 | 0.448 | 3.15 | -- | -- | -- | -1.28 | 21 | -- | -- | -- | -- |
| 742 | 1.27 | 9.18 | 0.886 | -- | -2.37 | -- | -- | -0.982 | -- | 14.5 | 2 | -- | -- |
| 228.84 | 0.705 | 9.3 | -- | 3.1 | -1.59 | -- | -- | -1.13 | 20.4 | 15.33 | 2 | -- | -- |
| 821.28 | 1.34 | 9.25 | 0.451 | -- | -- | -- | -- | -1.3 | -- | -- | -- | -- | -- |
| 257.71 | 0.751 | 9.34 | -- | 3.15 | -- | -- | -- | -1.33 | 21 | -- | -- | -- | -- |
| 761.11 | 1.28 | 9.21 | -- | -- | -2.07 | -- | -- | -1.11 | -- | 14.28 | 2 | -- | -- |
| 826.65 | 1.34 | 9.26 | -- | -- | -- | -- | -- | -1.35 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 192.91 | temperature | 30.0 | 10 | < th | dose dependent | sin | 5 | NA |
| 4 | 194.27 | temperature | 10.0 | 10 | > th | dose dependent | sin | 4 | NA |
| 5 | 194.32 | temperature | 20.0 | 10 | > th | dose dependent | sin | 6 | NA |
| 23 | 197.19 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 32 | 198.21 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 11 |
| 49 | 200.84 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 50 | 200.88 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 59 | 201.76 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 60 | 201.94 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 64 | 202.37 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 20 | 16 |
| 66 | 202.45 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 17 | 19 |
| 69 | 202.76 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 76 | 203.13 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 78 | 203.29 | temperature | 15.0 | 10 | > th | dose dependent | no | NA | NA |
| 79 | 203.38 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 81 | 203.45 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 21 | 20 |
| 84 | 203.64 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 92 | 203.80 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 94 | 203.83 | temperature | 30.0 | 10 | < th | dose dependent | no | NA | NA |
| 95 | 203.89 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 97 | 204.01 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 100 | 204.07 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 19 | 17 |
| 105 | 204.21 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 22 | 19 |
| 110 | 204.31 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 111 | 204.33 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 6 | 16 |
| 118 | 204.43 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 127 | 204.67 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 4 | 23 |
| 130 | 204.75 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 138 | 204.91 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 139 | 204.94 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 146 | 205.21 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 149 | 205.33 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 155 | 205.40 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 159 | 205.56 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 15 | 21 |
| 161 | 205.57 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 15 | 21 |
| 172 | 205.75 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 187 | 205.87 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 7 | 16 |
| 191 | 205.99 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 15 | 6 |
| 195 | 206.02 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 219 | 206.42 | wind | 7.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 254 | 206.90 | wind | 5.0 | 43200 | > th | dose independent | rect. | 15 | 7 |
| 261 | 206.95 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 17 | 21 |
| 273 | 207.07 | wind | 7.0 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 281 | 207.19 | wind | 7.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 285 | 207.27 | wind | 5.0 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 294 | 207.38 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 312 | 207.55 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 10 |
| 314 | 207.56 | wind | 7.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 338 | 207.94 | wind | 5.0 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 394 | 208.46 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 14 | 11 |
| 404 | 208.56 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 439 | 208.81 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 446 | 208.87 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 462 | 209.02 | wind | 5.0 | 43200 | > th | dose independent | sin | 18 | NA |
| 475 | 209.07 | wind | 5.0 | 43200 | > th | dose independent | rect. | 11 | 11 |
| 478 | 209.09 | wind | 5.0 | 43200 | < th | dose independent | sin | 17 | NA |
| 489 | 209.11 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 11 | 11 |
| 490 | 209.11 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 11 | 14 |
| 494 | 209.14 | wind | 3.0 | 43200 | > th | dose dependent | sin | 18 | NA |
| 503 | 209.19 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 9 | 12 |
| 515 | 209.25 | wind | 5.0 | 43200 | < th | dose independent | rect. | 11 | 11 |
| 539 | 209.35 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 15 |
| 549 | 209.39 | wind | 5.0 | 43200 | < th | dose independent | rect. | 11 | 14 |
| 563 | 209.44 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 14 |
| 586 | 209.53 | wind | 5.0 | 43200 | < th | dose independent | rect. | 9 | 12 |
| 631 | 209.71 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 666 | 209.89 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 683 | 209.94 | wind | 7.0 | 43200 | > th | dose independent | rect. | 14 | 18 |
| 704 | 210.03 | wind | 5.0 | 43200 | < th | dose independent | rect. | 14 | 16 |
| 727 | 210.13 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 14 | 17 |
| 741 | 210.19 | wind | 5.0 | 43200 | < th | dose independent | rect. | 6 | 15 |
| 758 | 210.24 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 799 | 210.36 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 805 | 210.37 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 827 | 210.45 | wind | 5.0 | 43200 | > th | dose independent | rect. | 6 | 15 |
| 953 | 210.84 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 958 | 210.87 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 960 | 210.87 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 965 | 210.89 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 976 | 210.92 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 7 |