BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0811400 Os03g0811400|Os03g0811400
(261 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G41130.1 | chr2:17143360-17144686 FORWARD LENGTH=254 68 4e-12
AT1G68810.1 | chr1:25861289-25862882 FORWARD LENGTH=369 64 1e-10
AT3G56770.1 | chr3:21029202-21030618 REVERSE LENGTH=231 60 9e-10
AT3G25710.1 | chr3:9369598-9371096 FORWARD LENGTH=345 50 8e-07
>AT2G41130.1 | chr2:17143360-17144686 FORWARD LENGTH=254
Length = 253
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 72/167 (43%), Gaps = 28/167 (16%)
Query: 82 IKSHLDRLRAI-------DKASLLAKAVERVRDLKQRMAGIGEAAPAHLFPTEHDEIXXX 134
I SHL++LR + DKA+LLAK V+RVR+LKQ+ ++ L P+E DEI
Sbjct: 82 INSHLNKLRNVLSCNSKTDKATLLAKVVQRVRELKQQTLETSDSDQT-LLPSETDEI--- 137
Query: 135 XXXXXXXXXXXXXXXXFEASVCCDDRCDLLPXXXXXXXXXXXXXXXXXXXXXGGRVRNVL 194
F+AS+CC+DR DLLP GGR R+VL
Sbjct: 138 -SVLHFGDYSNDGHIIFKASLCCEDRSDLLPDLMEILKSLNMKTLRAEMVTIGGRTRSVL 196
Query: 195 VLXXXXXXXXXXXXXXXXXXXYSAVSNDGGDFLKEALRALVERPGAA 241
V+ + FL+ AL++L+ER +
Sbjct: 197 VVAADKEMHGV----------------ESVHFLQNALKSLLERSSKS 227
>AT1G68810.1 | chr1:25861289-25862882 FORWARD LENGTH=369
Length = 368
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 13/122 (10%)
Query: 82 IKSHLDRLRAI-------DKASLLAKAVERVRDLKQRMAGIGEAAPAHLFPTEHDEIXXX 134
I +HL +LR+I DKASLLA+ ++ V++LK+ + I E +L PTE DE+
Sbjct: 189 INNHLAKLRSILPNTTKTDKASLLAEVIQHVKELKRETSVISE---TNLVPTESDEL--- 242
Query: 135 XXXXXXXXXXXXXXXXFEASVCCDDRCDLLPXXXXXXXXXXXXXXXXXXXXXGGRVRNVL 194
+AS+CC+DR DLLP GGRV+NVL
Sbjct: 243 TVAFTEEEETGDGRFVIKASLCCEDRSDLLPDMIKTLKAMRLKTLKAEITTVGGRVKNVL 302
Query: 195 VL 196
+
Sbjct: 303 FV 304
>AT3G56770.1 | chr3:21029202-21030618 REVERSE LENGTH=231
Length = 230
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 79/192 (41%), Gaps = 38/192 (19%)
Query: 82 IKSHLDRLRAI-------DKASLLAKAVERVRDLKQRMAGIGEAAPAHLFPTEHDEIXXX 134
I SHL++LR + DK++LLAK V+RV++LKQ+ I + P+E DEI
Sbjct: 60 INSHLNKLRKLLSCNSKTDKSTLLAKVVQRVKELKQQTLEITDET----IPSETDEI--S 113
Query: 135 XXXXXXXXXXXXXXXXFEASVCCDDRCDLLPXXXXXXXXXXXXXXXXXXXXXGGRVRNVL 194
F+ S CC+DR +LL GGR RNVL
Sbjct: 114 VLNIEDCSRGDDRRIIFKVSFCCEDRPELLKDLMETLKSLQMETLFADMTTVGGRTRNVL 173
Query: 195 VLXXXXXXXXXXXXXXXXXXXYSAVSNDGGDFLKEALRALVERPGAAA---------GDR 245
V+ + V +FL+ AL++L+ER + +R
Sbjct: 174 VV--------------AADKEHHGVQ--SVNFLQNALKSLLERSSKSVMVGHGGGGGEER 217
Query: 246 PKRRRVVSDMNM 257
KRRR + + M
Sbjct: 218 LKRRRALDHIIM 229
>AT3G25710.1 | chr3:9369598-9371096 FORWARD LENGTH=345
Length = 344
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 15/122 (12%)
Query: 82 IKSHLDRLRAI-------DKASLLAKAVERVRDLKQRMAGIGEAAPAHLFPTEHDEIXXX 134
I +HL +LR+I DKASLLA+ ++ +++LK++ + I + + PTE D++
Sbjct: 147 INTHLAKLRSILPNTTKTDKASLLAEVIQHMKELKRQTSQITD---TYQVPTECDDL--- 200
Query: 135 XXXXXXXXXXXXXXXXFEASVCCDDRCDLLPXXXXXXXXXXXXXXXXXXXXXGGRVRNVL 194
AS CC DR DL+ GGRV+N+L
Sbjct: 201 --TVDSSYNDEEGNLVIRASFCCQDRTDLMHDVINALKSLRLRTLKAEIATVGGRVKNIL 258
Query: 195 VL 196
L
Sbjct: 259 FL 260
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.138 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,877,382
Number of extensions: 62433
Number of successful extensions: 167
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 4
Length of query: 261
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 164
Effective length of database: 8,447,217
Effective search space: 1385343588
Effective search space used: 1385343588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 110 (47.0 bits)