Os03g0811100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Magnesium-chelatase subunit chlD, chloroplast precursor (EC 6.6.1.1) (Mg-protoporphyrin IX chelatase) (Mg-chelatase subunit D).
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Os03g0811100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Magnesium-chelatase subunit chlD, chloroplast precursor (EC 6.6.1.1) (Mg-protoporphyrin IX chelatase) (Mg-chelatase subunit D).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.61 | 0.383 | 13 | -1.68 | 1.39 | 0.998 | 1.32 | 2.46 | -0.715 | 22.6 | 29.8 | 275 | -- | -- |
| 71.88 | 0.395 | 13 | -1.7 | 1.38 | 0.917 | 0.812 | -- | -0.729 | 22.6 | 29.1 | 324 | -- | -- |
| 72.61 | 0.397 | 13 | -1.71 | 1.38 | 1 | -- | 1.44 | -0.722 | 22.6 | 31.15 | 304 | -- | -- |
| 74.7 | 0.403 | 13 | -1.75 | 1.36 | 0.947 | -- | -- | -0.729 | 22.7 | 30.33 | 324 | -- | -- |
| 127.21 | 0.525 | 12.9 | -1.69 | -- | 1.17 | -- | 1.4 | -0.752 | -- | 23.35 | 956 | -- | -- |
| 81.92 | 0.424 | 13 | -1.7 | 1.28 | -- | 1.04 | -- | -0.663 | 21.7 | -- | -- | -- | -- |
| 86.04 | 0.434 | 13 | -1.74 | 1.27 | -- | -- | -- | -0.665 | 21.7 | -- | -- | -- | -- |
| 115.62 | 0.501 | 12.9 | -1.87 | -- | 1.4 | -- | -- | -0.812 | -- | -0.1305 | 989 | -- | -- |
| 122.36 | 0.515 | 13 | -- | 1.2 | 1.24 | -- | -- | -0.735 | 21.8 | 51.55 | 24991 | -- | -- |
| 182.36 | 0.631 | 12.9 | -1.73 | -- | -- | -- | -- | -0.666 | -- | -- | -- | -- | -- |
| 166.19 | 0.603 | 12.9 | -- | 1.27 | -- | -- | -- | -0.47 | 21.6 | -- | -- | -- | -- |
| 206.24 | 0.669 | 12.9 | -- | -- | 1.26 | -- | -- | -0.629 | -- | -1.803 | 971 | -- | -- |
| 261.52 | 0.755 | 12.9 | -- | -- | -- | -- | -- | -0.474 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.67 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 20 |
| 9 | 63.25 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 6 |
| 16 | 63.59 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 22 | 63.80 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 48 | 64.48 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 49 | 64.53 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 60 | 64.88 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 11 |
| 108 | 65.61 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 11 |
| 138 | 66.01 | temperature | 25 | 90 | > th | dose dependent | sin | 1 | NA |
| 154 | 66.08 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 162 | 66.12 | radiation | 30 | 270 | > th | dose dependent | sin | 4 | NA |
| 169 | 66.16 | radiation | 30 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 180 | 66.25 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 23 |
| 183 | 66.26 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 6 | 18 |
| 184 | 66.27 | temperature | 10 | 270 | > th | dose dependent | sin | 4 | NA |
| 196 | 66.35 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 197 | 66.37 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 10 |
| 235 | 66.64 | radiation | 30 | 270 | > th | dose dependent | rect. | 8 | 8 |
| 252 | 66.65 | radiation | 30 | 270 | > th | dose dependent | no | NA | NA |
| 395 | 66.70 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 6 | 16 |
| 396 | 66.70 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 5 | 18 |
| 416 | 66.78 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 437 | 66.88 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 6 | 20 |
| 444 | 66.88 | radiation | 40 | 270 | < th | dose dependent | rect. | 4 | 10 |
| 472 | 66.96 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 505 | 67.03 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 8 |
| 531 | 67.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 20 |
| 741 | 67.38 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 797 | 67.51 | radiation | 40 | 270 | > th | dose independent | rect. | 13 | 23 |
| 818 | 67.59 | radiation | 30 | 270 | < th | dose independent | rect. | 3 | 20 |
| 819 | 67.59 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 8 | 9 |