BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0811100 Os03g0811100|AK072463
(754 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G08520.1 | chr1:2696538-2700819 FORWARD LENGTH=761 567 e-162
AT5G45930.1 | chr5:18628095-18629565 FORWARD LENGTH=419 199 4e-51
AT4G18480.1 | chr4:10201897-10203361 REVERSE LENGTH=425 199 4e-51
>AT1G08520.1 | chr1:2696538-2700819 FORWARD LENGTH=761
Length = 760
Score = 567 bits (1461), Expect = e-162, Method: Compositional matrix adjust.
Identities = 270/321 (84%), Positives = 299/321 (93%)
Query: 76 REYFPLAAVVGQDAIKTALLLGAIDREIGGIAISGKRGTAKTVMARGLHAMLPPIEVVVG 135
R++FPLAAVVGQ+ IKTALLLGA+DREIGGIAISG+RGTAKTVMARGLH +LPPIEVVVG
Sbjct: 80 RQFFPLAAVVGQEGIKTALLLGAVDREIGGIAISGRRGTAKTVMARGLHEILPPIEVVVG 139
Query: 136 SIANADPNYPEEWEEGLANQVQYDADGNLKTEIIKTPFVQIPLGITEDRLIGSVDVEASV 195
SI+NADP P+EWE+ L +++Y+AD +KTEI+K+PF+QIPLG+TEDRLIGSVDVE SV
Sbjct: 140 SISNADPACPDEWEDDLDERIEYNADNTIKTEIVKSPFIQIPLGVTEDRLIGSVDVEESV 199
Query: 196 KSGTTVFQPGLLAEAHRGVLYVDEINLLDEGVSNLLLNVLTEGVNIVEREGISFRHPCKP 255
K GTTVFQPGLLAEAHRGVLYVDEINLLDEG+SNLLLNVLT+GVNIVEREGISFRHPCKP
Sbjct: 200 KRGTTVFQPGLLAEAHRGVLYVDEINLLDEGISNLLLNVLTDGVNIVEREGISFRHPCKP 259
Query: 256 LLIATYNPEEGSVREHLLDRIAINLSADLPMSFDDRVAAVDIATQFQESSKEVFKMVEEE 315
LLIATYNPEEG+VREHLLDR+AINLSADLPMSF+DRVAAV IATQFQE EVF+MV EE
Sbjct: 260 LLIATYNPEEGAVREHLLDRVAINLSADLPMSFEDRVAAVGIATQFQERCNEVFRMVNEE 319
Query: 316 TEVAKTQIILAREYLKDVAISTEQLKYLVMEAIRGGCQGHRAELYAARVAKCLAAMEGRE 375
TE AKTQIILAREYLKDV IS EQLKYLV+EA+RGG QGHRAELYAARVAKCLAA+EGRE
Sbjct: 320 TETAKTQIILAREYLKDVKISREQLKYLVLEAVRGGVQGHRAELYAARVAKCLAAIEGRE 379
Query: 376 KVYVDDLKKAVELVILPRSIL 396
KV +DDL+KAVELVILPRS L
Sbjct: 380 KVTIDDLRKAVELVILPRSSL 400
Score = 502 bits (1293), Expect = e-142, Method: Compositional matrix adjust.
Identities = 252/304 (82%), Positives = 268/304 (88%), Gaps = 1/304 (0%)
Query: 452 FIFDAEGGIVDEKLLFFXXXXXXXXXXXXXXXNLIFSSDRGRYIGSMLPKGPIRRLAVDA 511
FIFDAEGG+VDEKLLFF N+IFS DRGRYI MLPKGP++RLAVDA
Sbjct: 457 FIFDAEGGLVDEKLLFFAQQAQKRRGKAGRAKNVIFSEDRGRYIKPMLPKGPVKRLAVDA 516
Query: 512 TLRAAAPYQKLRREKDRDKTRKVFVEKTDXXXXXXXXXXGALVIFVVDASGSMALNRMQN 571
TLRAAAPYQKLRREKD TRKVFVEKTD GALVIFVVDASGSMALNRMQN
Sbjct: 517 TLRAAAPYQKLRREKDISGTRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMALNRMQN 576
Query: 572 AKGAALKLLAESYTSRDQVSIIPFRGDFAEVLLPPSRSIAMARNRLEKLPCGGGSPLAHG 631
AKGAALKLLAESYTSRDQVSIIPFRGD AEVLLPPSRSIAMARNRLE+LPCGGGSPLAHG
Sbjct: 577 AKGAALKLLAESYTSRDQVSIIPFRGDAAEVLLPPSRSIAMARNRLERLPCGGGSPLAHG 636
Query: 632 LSTAVRVGLNAEKSGDVGRIMIVAITDGRANVSLKKSTDPEATS-DAPRPSSQELKDEIL 690
L+TAVRVGLNAEKSGDVGRIMIVAITDGRAN++LK+STDPE+ + DAPRP+S+ELKDEIL
Sbjct: 637 LTTAVRVGLNAEKSGDVGRIMIVAITDGRANITLKRSTDPESIAPDAPRPTSKELKDEIL 696
Query: 691 EVAGKIYKAGISLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISAATKTALSD 750
EVAGKIYKAG+SLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISA T+ ALSD
Sbjct: 697 EVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISATTRDALSD 756
Query: 751 LKSS 754
LK+S
Sbjct: 757 LKNS 760
>AT5G45930.1 | chr5:18628095-18629565 FORWARD LENGTH=419
Length = 418
Score = 199 bits (506), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 121/307 (39%), Positives = 174/307 (56%), Gaps = 2/307 (0%)
Query: 76 REYFPLAAVVGQDAIKTALLLGAIDREIGGIAISGKRGTAKTVMARGLHAMLPPIEVVVG 135
R +P AA+VGQD +K LLL ID +IGG+ I G RGT K+ R L +LP I VV G
Sbjct: 79 RPVYPFAAIVGQDEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPEITVVSG 138
Query: 136 SIANADPNYPEEWEEGLANQVQYDADGNLKTEIIKTPFVQIPLGITEDRLIGSVDVEASV 195
N+DP PE + + +VQ + L K V +PLG TEDR+ G++D+E ++
Sbjct: 139 DPYNSDPRDPECMGKEVREKVQKGEE--LSVIETKINMVDLPLGATEDRVCGTIDIEKAL 196
Query: 196 KSGTTVFQPGLLAEAHRGVLYVDEINLLDEGVSNLLLNVLTEGVNIVEREGISFRHPCKP 255
G F+PGLLA+A+RG+LYVDE+NLLD+ + ++LL+ G N VEREGIS HP +
Sbjct: 197 TEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARF 256
Query: 256 LLIATYNPEEGSVREHLLDRIAINLSADLPMSFDDRVAAVDIATQFQESSKEVFKMVEEE 315
+LI + NPEEG +R LLDR ++ + RV V+ +F + KE + +EE
Sbjct: 257 ILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDAELRVKIVEERARFDSNPKEFRETYQEE 316
Query: 316 TEVAKTQIILAREYLKDVAISTEQLKYLVMEAIRGGCQGHRAELYAARVAKCLAAMEGRE 375
+ QI AR L V I + + G R ++ R A+ LAA++GR+
Sbjct: 317 QLKLQEQITTARSNLSAVQIDQDLKVKISKVCAELDVDGLRGDMVINRAARALAALQGRD 376
Query: 376 KVYVDDL 382
+V +D+
Sbjct: 377 QVTAEDV 383
>AT4G18480.1 | chr4:10201897-10203361 REVERSE LENGTH=425
Length = 424
Score = 199 bits (506), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 121/313 (38%), Positives = 175/313 (55%), Gaps = 6/313 (1%)
Query: 76 REYFPLAAVVGQDAIKTALLLGAIDREIGGIAISGKRGTAKTVMARGLHAMLPPIEVVVG 135
R +P AA+VGQD +K LLL ID +IGG+ I G RGT K+ R L +LP I VV G
Sbjct: 85 RPVYPFAAIVGQDEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPEINVVAG 144
Query: 136 SIANADPNYPEEWEEGLANQVQYDADGNLKTEIIKTP--FVQIPLGITEDRLIGSVDVEA 193
N+DP PE + +V+ + + +I T V +PLG TEDR+ G++D+E
Sbjct: 145 DPYNSDPIDPE----FMGVEVRERVEKGEQVPVIATKINMVDLPLGATEDRVCGTIDIEK 200
Query: 194 SVKSGTTVFQPGLLAEAHRGVLYVDEINLLDEGVSNLLLNVLTEGVNIVEREGISFRHPC 253
++ G F+PGLLA+A+RG+LYVDE+NLLD+ + ++LL+ G N VEREGIS HP
Sbjct: 201 ALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPA 260
Query: 254 KPLLIATYNPEEGSVREHLLDRIAINLSADLPMSFDDRVAAVDIATQFQESSKEVFKMVE 313
+ +LI + NPEEG +R LLDR ++ D RV V+ +F + K+ +
Sbjct: 261 RFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDADLRVKIVEERARFDSNPKDFRDTYK 320
Query: 314 EETEVAKTQIILAREYLKDVAISTEQLKYLVMEAIRGGCQGHRAELYAARVAKCLAAMEG 373
E + + QI AR L V I E + G R ++ R AK LAA++G
Sbjct: 321 TEQDKLQDQISTARANLSSVQIDRELKVKISRVCSELNVDGLRGDIVTNRAAKALAALKG 380
Query: 374 REKVYVDDLKKAV 386
+++V DD+ +
Sbjct: 381 KDRVTPDDVATVI 393
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,718,444
Number of extensions: 439477
Number of successful extensions: 1313
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1308
Number of HSP's successfully gapped: 4
Length of query: 754
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 648
Effective length of database: 8,200,473
Effective search space: 5313906504
Effective search space used: 5313906504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 116 (49.3 bits)