Os03g0807900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Chaperonin-like RbcX family protein.
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Os03g0807900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Chaperonin-like RbcX family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.47 | 0.389 | 13.8 | -0.304 | 4.14 | 2.67 | 0.294 | -0.803 | -0.296 | 9.42 | 0.04236 | 252 | 7.73 | -- |
| 70.05 | 0.39 | 13.8 | -0.329 | 4.11 | 2.61 | 0.943 | -- | -0.296 | 9.4 | 0.04042 | 249 | 7.66 | -- |
| 68.63 | 0.386 | 13.8 | -0.31 | 4.14 | 2.68 | -- | -0.96 | -0.289 | 9.43 | 0.04997 | 253 | 7.74 | -- |
| 73.26 | 0.399 | 13.8 | -0.308 | 4.14 | 2.68 | -- | -- | -0.3 | 9.43 | 0.04 | 253 | 7.75 | -- |
| 115.1 | 0.5 | 13.9 | -0.401 | -- | 3.73 | -- | 0.467 | -0.405 | -- | 30.21 | 720 | 5.32 | -- |
| 115.94 | 0.505 | 13.9 | -0.446 | 3.59 | -- | 0.632 | -- | -0.408 | 6.64 | -- | -- | -- | -- |
| 116.94 | 0.506 | 13.9 | -0.437 | 3.59 | -- | -- | -- | -0.41 | 6.62 | -- | -- | -- | -- |
| 102.33 | 0.471 | 13.9 | -0.477 | -- | 4.37 | -- | -- | -0.349 | -- | 0.1677 | 838 | 6.36 | -- |
| 75.61 | 0.405 | 13.8 | -- | 4.14 | 2.69 | -- | -- | -0.268 | 9.42 | 2.207e-06 | 257 | 7.87 | -- |
| 789.45 | 1.31 | 13.9 | -0.351 | -- | -- | -- | -- | -0.338 | -- | -- | -- | -- | -- |
| 121.96 | 0.517 | 13.8 | -- | 3.59 | -- | -- | -- | -0.362 | 6.63 | -- | -- | -- | -- |
| 102.21 | 0.471 | 13.9 | -- | -- | 4.43 | -- | -- | -0.315 | -- | 0.12 | 845 | 6.44 | -- |
| 792.7 | 1.31 | 13.9 | -- | -- | -- | -- | -- | -0.299 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.70 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 2 | 66.87 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 17 |
| 3 | 67.00 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 5 | 67.36 | radiation | 1.0 | 270 | > th | dose independent | rect. | 8 | 6 |
| 6 | 67.43 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 8 |
| 7 | 67.43 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 8 | 67.47 | humidity | 60.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 9 | 67.51 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 10 | 67.51 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 12 | 67.51 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 13 | 67.51 | radiation | 1.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 18 | 67.51 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 16 |
| 19 | 67.51 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 20 | 67.51 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 25 | 67.59 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 27 | 67.65 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 28 | 67.90 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 29 | 67.90 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 30 | 67.90 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 34 | 68.18 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 8 |
| 35 | 68.18 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 38 | 68.59 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 6 |
| 39 | 68.59 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 6 |
| 40 | 68.62 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 18 |
| 41 | 68.72 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 43 | 68.89 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 6 |
| 44 | 68.89 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 8 | 6 |
| 45 | 68.89 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 8 | 6 |
| 46 | 68.89 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 18 |
| 51 | 69.20 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 16 |
| 56 | 69.37 | wind | 9.0 | 270 | < th | dose independent | rect. | 8 | 6 |
| 59 | 69.53 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 60 | 69.65 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 65 | 70.02 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 18 |
| 66 | 70.05 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 5 |
| 69 | 70.17 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 19 |
| 70 | 70.17 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 19 |
| 79 | 70.46 | temperature | 15.0 | 270 | > th | dose independent | rect. | 19 | 19 |
| 80 | 70.52 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 5 |
| 85 | 70.74 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 16 |
| 86 | 70.74 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 88 | 70.92 | wind | 1.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 89 | 70.93 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 91 | 70.93 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 14 | 5 |
| 94 | 70.93 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 19 |
| 128 | 71.35 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 19 |
| 130 | 71.42 | wind | 1.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 137 | 71.53 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 141 | 71.68 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 16 |
| 143 | 71.68 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 145 | 71.78 | wind | 1.0 | 270 | > th | dose independent | rect. | 8 | 6 |
| 151 | 72.00 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 153 | 72.08 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 22 |
| 154 | 72.08 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 22 |
| 183 | 72.42 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 18 |
| 184 | 72.42 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 18 |
| 190 | 72.55 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 195 | 72.62 | humidity | 50.0 | 90 | > th | dose independent | rect. | 16 | 17 |
| 196 | 72.73 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 5 |
| 198 | 72.73 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 5 |
| 212 | 72.96 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 227 | 73.28 | radiation | 1.0 | 270 | < th | dose dependent | sin | 14 | NA |
| 229 | 73.32 | humidity | 50.0 | 270 | > th | dose independent | rect. | 8 | 6 |
| 255 | 73.58 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 5 |
| 256 | 73.60 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 266 | 73.80 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 14 | 6 |
| 286 | 74.02 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 16 | 18 |
| 291 | 74.05 | radiation | 1.0 | 10 | > th | dose independent | rect. | 10 | 6 |
| 304 | 74.31 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 20 |
| 323 | 74.52 | humidity | 90.0 | 270 | < th | dose independent | rect. | 15 | 2 |
| 332 | 74.58 | temperature | 10.0 | 270 | > th | dose independent | rect. | 9 | 4 |
| 333 | 74.58 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 9 | 4 |
| 334 | 74.58 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 9 | 4 |
| 335 | 74.58 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 20 |
| 351 | 74.70 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 16 |
| 353 | 74.70 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 16 |
| 369 | 74.82 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 14 | 18 |
| 382 | 74.88 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 19 |
| 392 | 74.98 | wind | 9.0 | 270 | < th | dose independent | rect. | 9 | 4 |
| 399 | 75.13 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 16 | 4 |
| 410 | 75.25 | radiation | 10.0 | 10 | < th | dose independent | rect. | 14 | 6 |
| 412 | 75.25 | humidity | 50.0 | 10 | > th | dose independent | rect. | 16 | 18 |
| 417 | 75.27 | temperature | 10.0 | 10 | > th | dose independent | rect. | 10 | 6 |
| 419 | 75.27 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 10 | 6 |
| 420 | 75.27 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 10 | 6 |
| 421 | 75.27 | temperature | 10.0 | 10 | > th | dose independent | rect. | 16 | 18 |
| 423 | 75.27 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 10 | 6 |
| 439 | 75.38 | humidity | 60.0 | 270 | > th | dose independent | rect. | 1 | 8 |
| 459 | 75.49 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 5 |
| 468 | 75.54 | wind | 9.0 | 10 | < th | dose independent | rect. | 16 | 18 |
| 487 | 75.74 | wind | 9.0 | 10 | < th | dose independent | rect. | 10 | 6 |
| 495 | 75.80 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 8 |
| 496 | 75.80 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 8 |
| 499 | 75.80 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 8 |
| 500 | 75.80 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 8 |
| 501 | 75.80 | temperature | 10.0 | 270 | > th | dose independent | rect. | 9 | 16 |
| 503 | 75.82 | wind | 1.0 | 270 | > th | dose independent | rect. | 9 | 4 |
| 515 | 75.91 | temperature | 15.0 | 10 | > th | dose independent | rect. | 20 | 20 |
| 520 | 75.96 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 10 | 10 |
| 537 | 76.13 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 7 | 13 |
| 542 | 76.17 | wind | 1.0 | 270 | > th | dose independent | rect. | 19 | 19 |
| 567 | 76.32 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 16 |
| 575 | 76.39 | wind | 1.0 | 10 | > th | dose independent | rect. | 16 | 4 |
| 583 | 76.42 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 8 |
| 585 | 76.45 | temperature | 10.0 | 10 | > th | dose independent | rect. | 16 | 4 |
| 587 | 76.45 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 16 | 4 |
| 589 | 76.45 | radiation | 40.0 | 10 | < th | dose independent | rect. | 16 | 4 |
| 590 | 76.45 | radiation | 40.0 | 270 | < th | dose independent | rect. | 1 | 8 |
| 596 | 76.46 | humidity | 90.0 | 90 | < th | dose independent | rect. | 9 | 7 |
| 611 | 76.54 | radiation | 1.0 | 270 | < th | dose independent | sin | 14 | NA |
| 612 | 76.55 | humidity | 50.0 | 10 | > th | dose independent | rect. | 16 | 4 |
| 615 | 76.56 | humidity | 90.0 | 270 | < th | dose independent | rect. | 14 | 5 |
| 632 | 76.64 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 16 | 4 |
| 633 | 76.64 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 16 | 4 |
| 637 | 76.67 | wind | 9.0 | 10 | < th | dose independent | rect. | 16 | 4 |
| 641 | 76.73 | wind | 9.0 | 10 | < th | dose independent | rect. | 20 | 20 |
| 648 | 76.80 | humidity | 90.0 | 10 | < th | dose independent | rect. | 10 | 6 |
| 651 | 76.84 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 8 |
| 652 | 76.84 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 8 |
| 660 | 76.89 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 10 | 6 |
| 705 | 77.06 | wind | 1.0 | 10 | > th | dose independent | rect. | 10 | 6 |
| 729 | 77.15 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 16 | 18 |
| 735 | 77.21 | wind | 9.0 | 270 | < th | dose independent | rect. | 9 | 16 |
| 747 | 77.27 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 20 | 20 |
| 748 | 77.27 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 20 | 20 |
| 816 | 77.61 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 19 | 19 |
| 843 | 77.75 | radiation | 40.0 | 10 | < th | dose independent | rect. | 16 | 18 |
| 852 | 77.81 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 16 | 18 |
| 854 | 77.81 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 16 | 18 |
| 856 | 77.83 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 20 | 20 |
| 857 | 77.83 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 864 | 77.86 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 868 | 77.86 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 17 | 18 |
| 891 | 77.88 | wind | 1.0 | 270 | > th | dose independent | rect. | 9 | 16 |
| 895 | 77.92 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 7 |
| 897 | 77.93 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 14 | 5 |
| 902 | 77.95 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 8 |
| 914 | 78.03 | radiation | 1.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 929 | 78.06 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 17 | 4 |
| 932 | 78.06 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 17 | 4 |
| 939 | 78.06 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 20 |
| 954 | 78.13 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 16 | 4 |