BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0807900 Os03g0807900|AK060962
         (195 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G19855.1  | chr5:6712166-6713445 REVERSE LENGTH=204            204   2e-53
AT4G04330.1  | chr4:2116700-2118563 REVERSE LENGTH=175             47   9e-06

>AT5G19855.1 | chr5:6712166-6713445 REVERSE LENGTH=204
          Length = 203

 Score =  204 bits (520), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 92/128 (71%), Positives = 105/128 (82%)

Query: 64  LAVVCNLGGTYDEGFEDIHVQLINVFTYKAVKTVLTQLYEMNPPSYRWLYNFVAVNKPTD 123
           L V  ++ G YD+ F D+  Q++N FTYKAV+TVL QLYEMNPP Y W YN +  N+PTD
Sbjct: 75  LIVNEDVAGNYDDTFGDVQKQIVNYFTYKAVRTVLHQLYEMNPPQYTWFYNHIITNRPTD 134

Query: 124 GKVFLRALGKEKQELAERVMITRLHLYSKWIKKCDHAMMYERISDENLALMRERLMETVI 183
           GK FLRALGKE QELAERVMITRLHLY KWIKKCDH  +Y+ ISDENLALMRERLMETVI
Sbjct: 135 GKRFLRALGKESQELAERVMITRLHLYGKWIKKCDHGKIYQEISDENLALMRERLMETVI 194

Query: 184 WPTDDTNT 191
           WP+DDTN+
Sbjct: 195 WPSDDTNS 202



>AT4G04330.1 | chr4:2116700-2118563 REVERSE LENGTH=175
          Length = 174

 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 6/109 (5%)

Query: 84  QLINVFTYKAVKTVLTQLYEMNPPSYRWLYNFVAVNKPTDGKVFLRALGKEKQ---ELAE 140
            L + FTY AV+ V  QL   NP +Y  L  F+  N  +DG  F   L +       LA 
Sbjct: 64  HLHDFFTYVAVRIVSAQLESYNPEAYMELREFLDTNSVSDGDKFCATLMRRSSRHMNLAL 123

Query: 141 RVMITRLHLYSKWIKKCDHA--MMYERISDENLALMRERLMETVIWPTD 187
           R++  R   Y K   + D+   + ++ + D N  LMRE ++ET    TD
Sbjct: 124 RILEVR-SAYCKNDFEWDNMKRLAFKNVDDSNTRLMREYVLETSHVETD 171



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,647,754
Number of extensions: 121139
Number of successful extensions: 228
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 2
Length of query: 195
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 102
Effective length of database: 8,556,881
Effective search space: 872801862
Effective search space used: 872801862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)