Os03g0806400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Elongation factor P/YeiP family protein.
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Os03g0806400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Elongation factor P/YeiP family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 126.33 | 0.528 | 7.48 | 1.28 | 2.01 | 1.04 | 1.54 | -0.622 | 0.408 | 18.6 | 90.79 | 655 | -- | -- |
| 127 | 0.525 | 7.48 | 1.26 | 2.03 | 1.04 | 1.7 | -- | 0.401 | 18.6 | 90.69 | 650 | -- | -- |
| 130.91 | 0.533 | 7.48 | 1.37 | 1.95 | 1.02 | -- | -1.11 | 0.422 | 18.5 | 91.87 | 605 | -- | -- |
| 135.07 | 0.541 | 7.48 | 1.2 | 2 | 0.967 | -- | -- | 0.392 | 18.6 | 90.45 | 668 | -- | -- |
| 279.11 | 0.778 | 7.46 | 1.18 | -- | 1.21 | -- | 0.238 | 0.288 | -- | 73.83 | 1334 | -- | -- |
| 143.36 | 0.561 | 7.51 | 1.29 | 1.72 | -- | 1.49 | -- | 0.227 | 18.3 | -- | -- | -- | -- |
| 148.85 | 0.571 | 7.51 | 1.27 | 1.73 | -- | -- | -- | 0.232 | 18.3 | -- | -- | -- | -- |
| 278.23 | 0.777 | 7.44 | 1.2 | -- | 1.27 | -- | -- | 0.338 | -- | 70.69 | 1334 | -- | -- |
| 171.46 | 0.61 | 7.49 | -- | 1.97 | 1.09 | -- | -- | 0.304 | 18.8 | 89.46 | 761 | -- | -- |
| 303.54 | 0.814 | 7.47 | 1.23 | -- | -- | -- | -- | 0.195 | -- | -- | -- | -- | -- |
| 191.52 | 0.647 | 7.54 | -- | 1.71 | -- | -- | -- | 0.0901 | 18.3 | -- | -- | -- | -- |
| 313.36 | 0.824 | 7.46 | -- | -- | 1.4 | -- | -- | 0.249 | -- | 80.37 | 1336 | -- | -- |
| 343.2 | 0.865 | 7.5 | -- | -- | -- | -- | -- | 0.0585 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 115.92 | humidity | 90 | 720 | > th | dose dependent | rect. | 21 | 4 |
| 14 | 118.42 | humidity | 90 | 720 | > th | dose dependent | rect. | 9 | 17 |
| 42 | 120.27 | humidity | 90 | 720 | > th | dose independent | rect. | 21 | 3 |
| 46 | 120.46 | humidity | 90 | 720 | > th | dose dependent | sin | 16 | NA |
| 66 | 121.31 | humidity | 90 | 720 | < th | dose independent | rect. | 20 | 4 |
| 129 | 123.94 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 10 |
| 145 | 124.22 | humidity | 90 | 720 | > th | dose independent | rect. | 9 | 17 |
| 200 | 125.40 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 205 | 125.44 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 24 | 10 |
| 255 | 125.97 | humidity | 90 | 720 | > th | dose independent | sin | 15 | NA |
| 286 | 126.15 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 309 | 126.28 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 3 |
| 312 | 126.31 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 315 | 126.33 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 318 | 126.34 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 17 |
| 359 | 126.59 | humidity | 90 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 362 | 126.60 | humidity | 90 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 366 | 126.61 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 370 | 126.62 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 9 |
| 376 | 126.64 | humidity | 90 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 387 | 126.66 | humidity | 90 | 720 | > th | dose dependent | no | NA | NA |
| 418 | 126.75 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 5 |
| 544 | 127.15 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 8 |
| 650 | 127.49 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 11 |
| 787 | 127.82 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 21 |
| 801 | 127.85 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 853 | 127.98 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 22 |
| 913 | 128.10 | radiation | 1 | 1440 | > th | dose independent | sin | 22 | NA |
| 919 | 128.10 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 954 | 128.15 | humidity | 80 | 1440 | > th | dose independent | sin | 21 | NA |
| 964 | 128.16 | humidity | 90 | 720 | < th | dose independent | rect. | 10 | 16 |
| 990 | 128.21 | humidity | 70 | 1440 | > th | dose dependent | rect. | 18 | 22 |