BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0806400 Os03g0806400|AK073074
         (97 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G26310.2  | chr4:13314147-13316066 REVERSE LENGTH=262          114   8e-27

>AT4G26310.2 | chr4:13314147-13316066 REVERSE LENGTH=262
          Length = 261

 Score =  114 bits (286), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 66/86 (76%)

Query: 12  VFVEEKSFTYLYQEGDNVTLMEPETFEQLEVSKELFGKTAAYLKDEMKVTLQYFDGRPMS 71
           VFVEEKSFT LY EGD   L+EP TFEQ+EV  ++FGK A YLK+EMKV LQ +DGR +S
Sbjct: 134 VFVEEKSFTCLYAEGDTAYLIEPNTFEQVEVPLDIFGKAAVYLKEEMKVQLQLYDGRALS 193

Query: 72  ASVPPRVTCTVVEAQPHSKGITAQPQ 97
           AS+P  +TCTVVE Q   KG+T+ P+
Sbjct: 194 ASIPKHITCTVVETQLPMKGLTSAPR 219



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,106,018
Number of extensions: 72337
Number of successful extensions: 197
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 2
Length of query: 97
Length of database: 11,106,569
Length adjustment: 67
Effective length of query: 30
Effective length of database: 9,269,697
Effective search space: 278090910
Effective search space used: 278090910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)