Os03g0794700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 40S ribosomal protein S18.
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Os03g0794700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 40S ribosomal protein S18.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.61 | 0.395 | 12 | 0.179 | 0.445 | 0.865 | 0.581 | -0.654 | -0.0373 | 19.8 | 20.5 | 2815 | -- | -- |
| 71.36 | 0.393 | 12 | 0.288 | 0.419 | 0.974 | 0.517 | -- | -0.0221 | 19.7 | 20.5 | 2720 | -- | -- |
| 71.58 | 0.394 | 12 | 0.155 | 0.445 | 0.864 | -- | -0.694 | -0.0393 | 19.7 | 20.5 | 2811 | -- | -- |
| 72.34 | 0.396 | 11.9 | 0.289 | 0.44 | 0.965 | -- | -- | -0.0083 | 19.6 | 20.5 | 2721 | -- | -- |
| 81.47 | 0.42 | 11.9 | 0.234 | -- | 0.917 | -- | -0.509 | -0.0229 | -- | 20.53 | 2320 | -- | -- |
| 91.52 | 0.448 | 11.9 | 0.834 | 0.433 | -- | 0.665 | -- | 0.254 | 20.1 | -- | -- | -- | -- |
| 92.84 | 0.451 | 11.9 | 0.815 | 0.433 | -- | -- | -- | 0.255 | 20.1 | -- | -- | -- | -- |
| 81.92 | 0.422 | 11.9 | 0.33 | -- | 0.986 | -- | -- | 0.000893 | -- | 20.53 | 2320 | -- | -- |
| 73.97 | 0.401 | 12 | -- | 0.436 | 1.12 | -- | -- | -0.0602 | 19.8 | 20.5 | 2917 | -- | -- |
| 103.11 | 0.474 | 11.9 | 0.811 | -- | -- | -- | -- | 0.25 | -- | -- | -- | -- | -- |
| 110.36 | 0.491 | 11.9 | -- | 0.428 | -- | -- | -- | 0.164 | 20.2 | -- | -- | -- | -- |
| 84.07 | 0.427 | 12 | -- | -- | 1.11 | -- | -- | -0.0876 | -- | 20.54 | 3778 | -- | -- |
| 120.48 | 0.512 | 11.9 | -- | -- | -- | -- | -- | 0.159 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.16 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 2 | 70.21 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 4 | 70.27 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 9 |
| 8 | 70.30 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 9 |
| 9 | 70.31 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 10 | 70.31 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 13 | 70.32 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 98 | 70.83 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 129 | 70.95 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 136 | 70.99 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 143 | 71.01 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 156 | 71.06 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 195 | 71.21 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 221 | 71.27 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 253 | 71.38 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 367 | 71.70 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 369 | 71.71 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 2 |
| 379 | 71.74 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 531 | 72.05 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 603 | 72.19 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 611 | 72.20 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 648 | 72.26 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 822 | 72.51 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 22 |
| 844 | 72.53 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 847 | 72.54 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 875 | 72.57 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 909 | 72.60 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 22 |
| 932 | 72.63 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |