BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0794700 Os03g0794700|AK058881
(152 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G09800.1 | chr4:6173818-6174963 FORWARD LENGTH=153 256 5e-69
AT1G34030.1 | chr1:12370285-12371465 REVERSE LENGTH=153 256 5e-69
AT1G22780.1 | chr1:8067990-8069163 FORWARD LENGTH=153 256 5e-69
>AT4G09800.1 | chr4:6173818-6174963 FORWARD LENGTH=153
Length = 152
Score = 256 bits (653), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 119/152 (78%), Positives = 133/152 (87%)
Query: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRAGELT 60
MSL+A E+FQHILR+LNTNVDGKQKIMFALTSIKG+GRR +NI CKKAD+DMNKRAGEL+
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
Query: 61 PEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNH 120
E++ LMT+VANPRQFK+PDWFLNR+KDYKDG++SQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61 AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
Query: 121 RGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 152
RGLRHYWGLRVRGQH SKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
>AT1G34030.1 | chr1:12370285-12371465 REVERSE LENGTH=153
Length = 152
Score = 256 bits (653), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 119/152 (78%), Positives = 133/152 (87%)
Query: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRAGELT 60
MSL+A E+FQHILR+LNTNVDGKQKIMFALTSIKG+GRR +NI CKKAD+DMNKRAGEL+
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
Query: 61 PEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNH 120
E++ LMT+VANPRQFK+PDWFLNR+KDYKDG++SQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61 AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
Query: 121 RGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 152
RGLRHYWGLRVRGQH SKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
>AT1G22780.1 | chr1:8067990-8069163 FORWARD LENGTH=153
Length = 152
Score = 256 bits (653), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 119/152 (78%), Positives = 133/152 (87%)
Query: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRAGELT 60
MSL+A E+FQHILR+LNTNVDGKQKIMFALTSIKG+GRR +NI CKKAD+DMNKRAGEL+
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
Query: 61 PEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNH 120
E++ LMT+VANPRQFK+PDWFLNR+KDYKDG++SQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61 AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
Query: 121 RGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 152
RGLRHYWGLRVRGQH SKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.138 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,862,214
Number of extensions: 107277
Number of successful extensions: 303
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 3
Length of query: 152
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 62
Effective length of database: 8,639,129
Effective search space: 535625998
Effective search space used: 535625998
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 107 (45.8 bits)