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Os03g0793000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, A20-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.51 (0.0282) R2 : 0.678
β1 : 2.02 (0.103) R2dD : 0.283 R2D : 0.186
β2 : 1.96 (0.0996) R2dC : 0.59 R2C : -0.51
β3 : 3.09 (0.125) R2dE : 0.931 R2E : -0.235
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.638 (0.0605) R2dN8 : 0.107 R2N8 : -0.0168
σ : 0.527
deviance : 127.89
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_____
C
peak time of C : 22.3
E
wheather : temperature
threshold : 35.39
memory length : 242
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.25
open length of G : 9.49

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
114.85 0.504 9.52 1.93 1.72 3.08 -0.661 1.61 0.626 22.5 33.12 249 1.2 9.25
117.78 0.505 9.5 2.01 1.77 3 -1.39 -- 0.679 22.3 33.94 228 1.35 9.48
114.87 0.499 9.53 1.93 1.96 3.17 -- 2.1 0.627 22.3 35.06 239 1.32 9.48
127.89 0.527 9.51 2.02 1.96 3.09 -- -- 0.638 22.3 35.39 242 1.25 9.49
176.79 0.619 9.47 1.9 -- 2.69 -- 3.33 0.753 -- 27.79 124 0.812 9.57
188.02 0.643 9.49 1.82 1.43 -- 0.412 -- 0.437 4.22 -- -- -- --
188.46 0.643 9.5 1.81 1.43 -- -- -- 0.434 4.16 -- -- -- --
177.11 0.62 9.47 1.93 -- 2.23 -- -- 0.597 -- 29.07 46 1.73 9.65
231.85 0.709 9.58 -- 2.21 3.03 -- -- 0.382 22.1 41.28 229 1.35 9.47
298.92 0.808 9.5 1.87 -- -- -- -- 0.472 -- -- -- -- --
274.91 0.776 9.54 -- 1.46 -- -- -- 0.233 4.14 -- -- -- --
276.2 0.774 9.53 -- -- 2.03 -- -- 0.338 -- 29.61 42 1.8 9.46
391.02 0.923 9.55 -- -- -- -- -- 0.265 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 119.17 temperature 30.0 270 < th dose dependent rect. 1 9
3 121.67 temperature 30.0 90 < th dose dependent rect. 3 8
9 125.31 temperature 10.0 270 > th dose dependent rect. 6 9
13 128.00 temperature 30.0 90 < th dose dependent rect. 3 16
14 128.20 temperature 25.0 270 < th dose independent rect. 1 8
16 128.49 temperature 30.0 90 < th dose dependent rect. 3 18
24 129.17 temperature 30.0 90 < th dose dependent rect. 3 12
26 129.35 temperature 30.0 270 < th dose dependent rect. 1 18
29 129.72 temperature 20.0 270 > th dose independent rect. 5 10
40 131.96 temperature 30.0 90 < th dose dependent rect. 3 14
50 132.86 temperature 25.0 90 < th dose independent rect. 3 8
75 135.13 temperature 15.0 10 > th dose dependent rect. 6 10
84 135.72 temperature 10.0 270 > th dose dependent rect. 21 17
99 136.38 temperature 10.0 90 > th dose dependent sin 3 NA
128 137.44 temperature 15.0 10 > th dose dependent rect. 23 17
130 137.46 temperature 15.0 90 > th dose dependent rect. 23 16
161 138.34 temperature 30.0 90 < th dose dependent sin 3 NA
184 139.03 temperature 10.0 270 > th dose dependent rect. 19 20
242 140.46 temperature 20.0 10 > th dose dependent rect. 1 15
270 141.05 radiation 1.0 270 > th dose independent rect. 6 9
352 142.82 radiation 30.0 270 < th dose independent rect. 15 15
360 142.94 temperature 25.0 90 < th dose independent rect. 3 12
361 142.94 atmosphere 995.0 270 > th dose independent rect. 15 15
367 143.04 wind 9.0 270 < th dose independent rect. 15 15
397 143.45 wind 9.0 270 < th dose independent rect. 6 9
404 143.58 precipitation 0.1 270 < th dose independent rect. 6 9
405 143.58 precipitation 0.1 270 < th dose dependent rect. 6 9
423 143.91 atmosphere 1015.0 270 < th dose independent rect. 6 9
424 143.91 temperature 10.0 270 > th dose independent rect. 15 15
458 144.70 temperature 25.0 90 < th dose independent rect. 3 18
460 144.73 temperature 25.0 90 < th dose independent rect. 3 14
465 144.79 radiation 1.0 270 > th dose independent rect. 18 21
490 145.10 atmosphere 995.0 270 > th dose independent rect. 2 17
505 145.26 radiation 40.0 270 < th dose dependent rect. 1 9
518 145.41 atmosphere 995.0 270 > th dose independent rect. 6 9
522 145.47 temperature 25.0 270 > th dose independent rect. 24 14
537 145.69 temperature 30.0 270 < th dose dependent rect. 3 2
575 146.13 precipitation 0.1 270 < th dose independent rect. 15 15
578 146.13 precipitation 0.1 270 < th dose dependent rect. 15 15
584 146.19 atmosphere 1000.0 270 > th dose dependent rect. 14 6
609 146.51 atmosphere 995.0 270 > th dose independent rect. 1 19
626 146.67 temperature 20.0 270 > th dose independent rect. 20 18
638 146.78 temperature 10.0 270 > th dose dependent rect. 6 19
648 146.90 temperature 10.0 270 > th dose independent rect. 19 7
649 146.90 temperature 30.0 270 < th dose independent rect. 19 7
650 146.90 humidity 50.0 270 > th dose independent rect. 19 7
651 146.90 atmosphere 995.0 270 > th dose independent rect. 19 7
652 146.90 radiation 1.0 270 < th dose independent rect. 19 7
657 146.90 temperature 10.0 270 > th dose independent rect. 2 17
658 146.90 atmosphere 1015.0 270 < th dose independent rect. 2 17
659 146.90 precipitation 0.1 270 < th dose independent rect. 2 17
660 146.90 radiation 1.0 270 < th dose dependent rect. 19 7
665 146.90 precipitation 0.1 270 < th dose dependent rect. 2 17
674 146.93 wind 9.0 270 < th dose independent rect. 2 17
680 146.99 wind 9.0 270 < th dose independent rect. 19 7
683 147.04 precipitation 0.1 270 < th dose independent rect. 19 7
684 147.04 precipitation 0.1 270 < th dose dependent rect. 19 7
712 147.22 radiation 10.0 14400 < th dose dependent rect. 22 6
721 147.30 temperature 10.0 10 > th dose dependent rect. 6 23
732 147.42 atmosphere 1000.0 270 > th dose dependent rect. 15 4
763 147.87 temperature 25.0 270 < th dose independent sin 6 NA
780 148.07 radiation 10.0 43200 < th dose dependent rect. 24 3
786 148.12 radiation 20.0 270 < th dose independent rect. 1 8
791 148.14 humidity 50.0 270 > th dose dependent rect. 21 4
803 148.25 humidity 50.0 90 > th dose dependent rect. 21 6
814 148.36 humidity 50.0 270 > th dose independent rect. 6 9
821 148.39 atmosphere 1000.0 10 > th dose dependent rect. 16 7
823 148.40 temperature 15.0 270 > th dose independent rect. 1 20
860 148.54 temperature 10.0 270 > th dose independent rect. 21 4
861 148.54 temperature 30.0 270 < th dose independent rect. 21 4
862 148.54 humidity 50.0 270 > th dose independent rect. 21 4
865 148.54 atmosphere 995.0 270 > th dose independent rect. 21 4
866 148.54 radiation 1.0 270 < th dose independent rect. 21 4
871 148.54 wind 9.0 270 < th dose independent rect. 1 20
873 148.54 radiation 1.0 270 < th dose dependent rect. 21 4
905 148.61 wind 9.0 270 < th dose independent rect. 21 4
949 148.84 precipitation 0.1 270 < th dose independent rect. 21 4
952 148.84 precipitation 0.1 270 < th dose dependent rect. 21 4
965 148.92 radiation 40.0 270 < th dose dependent rect. 15 15
966 148.93 temperature 15.0 90 > th dose independent rect. 4 17