BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0793000 Os03g0793000|AK108205
(169 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G36320.1 | chr2:15229388-15229873 FORWARD LENGTH=162 110 4e-25
AT1G12440.1 | chr1:4241816-4242322 REVERSE LENGTH=169 94 4e-20
AT4G22820.1 | chr4:11987871-11988401 REVERSE LENGTH=177 89 1e-18
AT4G12040.1 | chr4:7215341-7215868 FORWARD LENGTH=176 88 2e-18
AT3G52800.1 | chr3:19569806-19570318 FORWARD LENGTH=171 87 5e-18
AT1G51200.1 | chr1:18985690-18986211 FORWARD LENGTH=174 84 4e-17
AT3G12630.1 | chr3:4012707-4013189 FORWARD LENGTH=161 83 6e-17
AT2G27580.1 | chr2:11776640-11777131 REVERSE LENGTH=164 81 3e-16
AT4G25380.1 | chr4:12975936-12976328 REVERSE LENGTH=131 80 5e-16
AT4G14225.1 | chr4:8198777-8199202 FORWARD LENGTH=126 79 1e-15
>AT2G36320.1 | chr2:15229388-15229873 FORWARD LENGTH=162
Length = 161
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 72/156 (46%), Gaps = 1/156 (0%)
Query: 11 DETACGSGAGAAMCVTGCGFFGSEATNNMCSRCYREH-XXXXXXXXXXXXXXXDLELVGV 69
+E C + G +CV CGFFGS AT N+CS CY + L V
Sbjct: 3 EEHRCETPEGHRLCVNNCGFFGSSATMNLCSNCYGDLCLKQQQQASMKSTVESSLSPVIA 62
Query: 70 AETTTKKARMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCRKKVGLTGFKCRCGGNF 129
A + CRK+VGLTGF CRCG F
Sbjct: 63 PVLENYAAELEIPTTKKTEEKKPIQIPTEQPSPPQRPNRCTVCRKRVGLTGFMCRCGTTF 122
Query: 130 CGGHRHADAHGCGFDYKSAGKEQIAKQNPLVVADKL 165
CG HR+ + HGC FD+KSAG+E+IAK NPLV+A KL
Sbjct: 123 CGSHRYPEVHGCTFDFKSAGREEIAKANPLVIAAKL 158
>AT1G12440.1 | chr1:4241816-4242322 REVERSE LENGTH=169
Length = 168
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 70/154 (45%), Gaps = 5/154 (3%)
Query: 17 SGAGAAMCVTGCGFFGSEATNNMCSRCYREHXXXXXXXXXXXXXXXDLELVGVAETTTKK 76
S + +CV GCGFFGS + N+CS+CYR+ +T ++
Sbjct: 12 SPSEPKLCVKGCGFFGSPSNMNLCSKCYRDIRATEEQTASAKAAVEKSLNPNKPKTQPQQ 71
Query: 77 AR-----MXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCRKKVGLTGFKCRCGGNFCG 131
++ + C KKVG+TGFKCRCG FCG
Sbjct: 72 SQEITQGVLGSGSSSSSTRGGDSAAAPLDPPKSTATRCLSCNKKVGVTGFKCRCGSTFCG 131
Query: 132 GHRHADAHGCGFDYKSAGKEQIAKQNPLVVADKL 165
HR+ ++H C FD+K +E IAK NP+V ADK+
Sbjct: 132 THRYPESHECQFDFKGVAREAIAKANPVVKADKV 165
>AT4G22820.1 | chr4:11987871-11988401 REVERSE LENGTH=177
Length = 176
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 64/153 (41%), Gaps = 10/153 (6%)
Query: 23 MCVTGCGFFGSEATNNMCSRCYR------EHXXXXXXXXXXXXXXXDLELVGVAE----T 72
+CV GCGFFGS + ++CS+CYR + +AE
Sbjct: 21 LCVKGCGFFGSPSNMDLCSKCYRGICAEEAQTAVAKAAVEKSFKPSPPRSLFIAEPPAVV 80
Query: 73 TTKKARMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCRKKVGLTGFKCRCGGNFCGG 132
K C KKVG+ GFKC+CG FCG
Sbjct: 81 VEPKPEKAAVVVVSAEPSSSAVPEANEPSRPARTNRCLCCNKKVGIMGFKCKCGSTFCGE 140
Query: 133 HRHADAHGCGFDYKSAGKEQIAKQNPLVVADKL 165
HR+ + H C FD+K G+ +IAK NP+V ADK+
Sbjct: 141 HRYPETHDCSFDFKEVGRGEIAKANPVVKADKI 173
>AT4G12040.1 | chr4:7215341-7215868 FORWARD LENGTH=176
Length = 175
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 65/155 (41%), Gaps = 12/155 (7%)
Query: 23 MCVTGCGFFGSEATNNMCSRCYRE-HXXXXXXXXXXXXXXXDLELVGVA--------ETT 73
+C GCGFFGS + N+CS+CYR L+L +
Sbjct: 18 LCDNGCGFFGSPSNMNLCSKCYRSLRAEEDQTAVAKAAVKNSLKLPSCSIIAPGQKHPLE 77
Query: 74 TKKARMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XCRKKVGLTGFKCRCGGNFC 130
K A + C KKVG+ GFKC+CG FC
Sbjct: 78 IKPAHLETVVVTAEPSSVPVAAEQDEAEPSRPVRPNNRCFSCNKKVGVMGFKCKCGSTFC 137
Query: 131 GGHRHADAHGCGFDYKSAGKEQIAKQNPLVVADKL 165
G HR+ + H C FD+K G++ IAK NPLV ADK+
Sbjct: 138 GSHRYPEKHECSFDFKEVGRDAIAKANPLVKADKV 172
>AT3G52800.1 | chr3:19569806-19570318 FORWARD LENGTH=171
Length = 170
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 38/54 (70%), Positives = 45/54 (83%)
Query: 112 CRKKVGLTGFKCRCGGNFCGGHRHADAHGCGFDYKSAGKEQIAKQNPLVVADKL 165
CRK+VGLTGFKCRCG FCG HR+ + HGC +D+KSAG+E+IAK NPLV A KL
Sbjct: 114 CRKRVGLTGFKCRCGTMFCGVHRYPEIHGCSYDFKSAGREEIAKANPLVKAAKL 167
>AT1G51200.1 | chr1:18985690-18986211 FORWARD LENGTH=174
Length = 173
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 73/167 (43%), Gaps = 12/167 (7%)
Query: 11 DETACGSGA-GAAMCVTGCGFFGSEATNNMCSRCYREHXXXXXX----------XXXXXX 59
D+T C S G +C CGFFGS AT NMCS+C+++
Sbjct: 4 DKTGCQSPPEGPKLCTNNCGFFGSAATMNMCSKCHKDMLFQQEQGAKFASAVSGTSSSSN 63
Query: 60 XXXDLELVGVAETTTKKAR-MXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCRKKVGL 118
+ + + TK M C K+VGL
Sbjct: 64 IIKETFTAALVDIETKSVEPMTVSVQPSSVQVVAEVVAPEEAAKPKGPSRCTTCNKRVGL 123
Query: 119 TGFKCRCGGNFCGGHRHADAHGCGFDYKSAGKEQIAKQNPLVVADKL 165
TGFKCRCG FCG HR+AD H C F+Y +A +E IAK NP+V A+KL
Sbjct: 124 TGFKCRCGSLFCGTHRYADVHDCSFNYHAAAQEAIAKANPVVKAEKL 170
>AT3G12630.1 | chr3:4012707-4013189 FORWARD LENGTH=161
Length = 160
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 44/55 (80%)
Query: 112 CRKKVGLTGFKCRCGGNFCGGHRHADAHGCGFDYKSAGKEQIAKQNPLVVADKLA 166
CRKKVGLTGF+CRCG FC HR++D H C +DYK+AG+E IA++NP+V A K+
Sbjct: 104 CRKKVGLTGFRCRCGELFCSEHRYSDRHDCSYDYKTAGREAIARENPVVKAAKMV 158
>AT2G27580.1 | chr2:11776640-11777131 REVERSE LENGTH=164
Length = 163
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 44/54 (81%)
Query: 112 CRKKVGLTGFKCRCGGNFCGGHRHADAHGCGFDYKSAGKEQIAKQNPLVVADKL 165
CR++VG+TGF+CRCG FCG HR+A+ H C FD+K GK++IAK NP+V ADKL
Sbjct: 107 CRRRVGITGFRCRCGFVFCGTHRYAEQHECSFDFKRMGKDKIAKANPIVKADKL 160
>AT4G25380.1 | chr4:12975936-12976328 REVERSE LENGTH=131
Length = 130
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 63/151 (41%), Gaps = 36/151 (23%)
Query: 21 AAMCVTGCGFFGSEATNNMCSRCYREHXXXXXXXXXXXXXXXDLEL------VGVAETTT 74
A C GCG +G+ NN+CS CY++ + V E
Sbjct: 7 ALPCEGGCGLYGTRVNNNLCSLCYKKSVLQHSPALRFEPETEQSQCCPPTNSPAVEEEPV 66
Query: 75 KKARMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCRKKVGLTGFKCRCGGNFCGGHR 134
KK R C++KVG+ GFKCRCG FCG HR
Sbjct: 67 KKRR------------------------------CGICKRKVGMLGFKCRCGHMFCGSHR 96
Query: 135 HADAHGCGFDYKSAGKEQIAKQNPLVVADKL 165
+ + H C FDYK +G+ +A Q PL+ ADKL
Sbjct: 97 YPEEHSCPFDYKQSGRLALATQLPLIRADKL 127
>AT4G14225.1 | chr4:8198777-8199202 FORWARD LENGTH=126
Length = 125
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 64/144 (44%), Gaps = 27/144 (18%)
Query: 22 AMCVTGCGFFGSEATNNMCSRCYREHXXXXXXXXXXXXXXXDLELVGVAETTTKKARMXX 81
++C+ GCGFF + T N+CS+CY + ++ E T ++A +
Sbjct: 6 SLCIRGCGFFSTSQTKNLCSKCYNDFLKDESARYLATF---NVNTKAAEEVTAQEATVLG 62
Query: 82 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCRKKVGLTGFKCRCGGNFCGGHRHADAHGC 141
C+KKVGL GF CRCG F HR+ + H C
Sbjct: 63 SKGGCA------------------------CKKKVGLLGFHCRCGHLFFASHRYPEEHSC 98
Query: 142 GFDYKSAGKEQIAKQNPLVVADKL 165
DYKSA + +AKQNP+V DKL
Sbjct: 99 PSDYKSAAIDVLAKQNPVVKGDKL 122
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.135 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,857,639
Number of extensions: 85924
Number of successful extensions: 219
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 11
Length of query: 169
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 78
Effective length of database: 8,611,713
Effective search space: 671713614
Effective search space used: 671713614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 108 (46.2 bits)