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Os03g0792400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase M50 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.4 (0.0226) R2 : 0.863
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.38 (0.0873) R2dC : 0.171 R2C : 0.507
β3 : -2.27 (0.107) R2dE : 0.321 R2E : 0.672
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.286 (0.0482) R2dN8 : 0.0148 R2N8 : 0.0329
σ : 0.419
deviance : 80.98
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C
peak time of C : 17.3
E
wheather : temperature
threshold : 13.2
memory length : 346
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.37
open length of G : 5.88

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
79.62 0.419 12.4 -0.244 1.54 -2.08 0.777 0.353 -0.321 17.4 14.74 288 1.87 5.97
78.8 0.413 12.4 -0.295 1.52 -2.13 0.695 -- -0.299 17.5 14.34 306 1.78 5.73
78.84 0.414 12.4 -0.331 1.37 -2.26 -- -0.739 -0.348 17.3 13.01 325 1.58 5.79
79.18 0.414 12.4 -0.286 1.39 -2.26 -- -- -0.326 17.3 13.09 329 1.54 5.85
113.52 0.496 12.4 0.055 -- -2.81 -- 0.363 -0.312 -- 3.842 270 0.804 7.35
132.92 0.54 12.5 -0.396 2.85 -- 0.753 -- -0.564 18.1 -- -- -- --
134.31 0.543 12.5 -0.404 2.86 -- -- -- -0.562 18.1 -- -- -- --
100.14 0.466 12.4 -0.265 -- -3.19 -- -- -0.317 -- 1.12 398 0.0667 6.72
80.98 0.419 12.4 -- 1.38 -2.27 -- -- -0.286 17.3 13.2 346 1.37 5.88
557.79 1.1 12.5 -0.484 -- -- -- -- -0.625 -- -- -- -- --
138.61 0.551 12.5 -- 2.86 -- -- -- -0.517 18.1 -- -- -- --
100.65 0.467 12.4 -- -- -3.3 -- -- -0.227 -- 6.716 404 0.0145 6.73
563.98 1.11 12.4 -- -- -- -- -- -0.572 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 80.74 temperature 15.0 270 > th dose dependent rect. 2 6
3 81.54 temperature 15.0 270 > th dose dependent rect. 3 4
12 85.09 temperature 10.0 90 > th dose dependent rect. 4 18
13 85.12 temperature 15.0 270 > th dose independent rect. 2 19
14 85.66 temperature 10.0 270 > th dose dependent rect. 16 15
17 85.91 temperature 15.0 270 > th dose independent rect. 3 17
19 86.77 temperature 15.0 270 > th dose independent rect. 16 15
24 87.10 precipitation 0.1 270 < th dose independent rect. 3 17
26 87.10 precipitation 0.1 270 < th dose dependent rect. 3 17
27 87.13 humidity 50.0 270 > th dose dependent rect. 20 6
30 87.23 temperature 15.0 270 > th dose independent rect. 1 21
36 87.78 temperature 20.0 270 > th dose independent rect. 3 4
45 88.14 precipitation 0.1 270 < th dose independent rect. 16 15
46 88.14 precipitation 0.1 270 < th dose dependent rect. 16 15
52 88.64 temperature 10.0 270 > th dose dependent rect. 2 19
53 88.67 wind 5.0 270 < th dose independent rect. 2 5
54 88.67 wind 9.0 270 < th dose dependent rect. 2 5
57 88.75 wind 9.0 270 < th dose independent rect. 20 7
60 88.85 temperature 10.0 270 > th dose independent rect. 20 7
61 88.85 temperature 30.0 270 < th dose independent rect. 20 7
62 88.85 humidity 50.0 270 > th dose independent rect. 20 7
65 88.85 atmosphere 995.0 270 > th dose independent rect. 20 7
66 88.85 radiation 1.0 270 < th dose independent rect. 20 7
72 88.85 atmosphere 1015.0 270 < th dose independent rect. 3 17
73 88.85 radiation 1.0 270 < th dose dependent rect. 20 7
78 88.87 temperature 15.0 10 > th dose dependent rect. 4 5
92 89.33 atmosphere 1015.0 270 < th dose independent rect. 2 19
93 89.35 temperature 20.0 270 > th dose independent rect. 2 6
101 89.56 precipitation 0.1 270 < th dose independent rect. 20 7
102 89.56 precipitation 0.1 270 < th dose dependent rect. 20 7
122 89.60 wind 9.0 270 < th dose independent rect. 7 9
143 89.65 radiation 30.0 270 < th dose independent rect. 16 15
147 89.70 precipitation 0.1 270 < th dose independent rect. 2 5
148 89.70 precipitation 0.1 270 < th dose dependent rect. 2 5
150 89.73 temperature 10.0 270 > th dose independent rect. 7 9
151 89.73 atmosphere 1015.0 270 < th dose independent rect. 7 9
167 89.99 precipitation 0.1 270 < th dose independent rect. 21 5
169 89.99 precipitation 0.1 270 < th dose dependent rect. 21 5
176 90.06 precipitation 0.1 270 < th dose independent rect. 7 9
177 90.06 precipitation 0.1 270 < th dose dependent rect. 7 9
209 90.33 wind 9.0 270 < th dose independent rect. 3 17
228 90.69 wind 9.0 270 < th dose independent rect. 7 19
232 90.75 atmosphere 995.0 270 > th dose independent rect. 7 8
238 90.90 wind 9.0 270 < th dose independent rect. 16 15
246 91.08 precipitation 0.1 270 < th dose independent rect. 1 21
247 91.08 precipitation 0.1 270 < th dose dependent rect. 1 21
252 91.17 temperature 10.0 270 > th dose independent rect. 2 5
254 91.17 temperature 30.0 270 < th dose independent rect. 2 5
255 91.17 humidity 50.0 270 > th dose independent rect. 2 5
257 91.17 atmosphere 995.0 270 > th dose independent rect. 2 5
258 91.17 atmosphere 1015.0 270 < th dose independent rect. 2 5
259 91.17 radiation 40.0 270 < th dose independent rect. 2 5
260 91.17 temperature 10.0 270 > th dose independent rect. 7 19
261 91.18 radiation 20.0 270 < th dose independent rect. 2 5
271 91.35 atmosphere 995.0 270 > th dose independent rect. 16 15
332 91.79 radiation 40.0 270 < th dose dependent rect. 3 4
338 91.84 atmosphere 995.0 270 > th dose independent rect. 2 18
357 92.00 radiation 1.0 30 < th dose dependent rect. 22 16
360 92.02 temperature 15.0 270 > th dose independent rect. 13 8
361 92.03 humidity 50.0 270 > th dose independent rect. 7 20
381 92.10 wind 1.0 270 > th dose independent rect. 7 8
385 92.12 radiation 40.0 270 < th dose dependent rect. 2 6
394 92.22 radiation 1.0 30 < th dose dependent rect. 22 10
405 92.31 radiation 1.0 30 < th dose independent rect. 22 16
425 92.44 precipitation 0.1 270 < th dose independent rect. 7 19
428 92.44 precipitation 0.1 270 < th dose dependent rect. 7 19
437 92.54 radiation 1.0 30 < th dose independent rect. 22 10
450 92.62 radiation 1.0 270 > th dose independent rect. 17 13
465 92.74 radiation 40.0 270 < th dose dependent rect. 15 16
476 92.82 temperature 10.0 270 > th dose independent rect. 22 3
477 92.82 temperature 30.0 270 < th dose independent rect. 22 3
478 92.82 humidity 50.0 270 > th dose independent rect. 22 3
481 92.82 atmosphere 995.0 270 > th dose independent rect. 22 3
482 92.82 radiation 1.0 270 < th dose independent rect. 22 3
500 92.82 radiation 1.0 270 < th dose dependent rect. 22 3
559 93.04 wind 9.0 90 < th dose dependent rect. 4 17
560 93.05 precipitation 0.1 270 < th dose independent rect. 22 3
561 93.05 precipitation 0.1 270 < th dose dependent rect. 22 3
566 93.07 temperature 20.0 30 > th dose independent rect. 4 5
570 93.08 radiation 1.0 270 < th dose dependent rect. 5 22
585 93.16 precipitation 0.1 270 < th dose independent rect. 1 8
586 93.16 precipitation 0.1 270 < th dose dependent rect. 1 8
600 93.28 humidity 50.0 270 > th dose independent rect. 7 8
605 93.32 atmosphere 1010.0 270 < th dose independent rect. 13 8
613 93.36 humidity 50.0 270 > th dose dependent rect. 3 4
647 93.54 wind 9.0 270 < th dose dependent rect. 20 6
740 94.15 wind 9.0 270 < th dose independent rect. 9 16
766 94.40 temperature 30.0 270 < th dose independent rect. 1 8
777 94.47 temperature 10.0 270 > th dose independent rect. 21 16
778 94.47 atmosphere 995.0 270 > th dose independent rect. 21 16
801 94.56 radiation 40.0 270 < th dose independent rect. 13 8
814 94.64 radiation 1.0 90 < th dose dependent sin 11 NA
822 94.71 wind 9.0 270 < th dose independent rect. 21 16
840 94.77 wind 9.0 270 < th dose dependent rect. 21 4
859 94.89 wind 1.0 270 > th dose independent rect. 21 5
860 94.90 atmosphere 995.0 270 > th dose dependent rect. 21 5
863 94.92 atmosphere 995.0 270 > th dose independent rect. 7 19
877 94.97 radiation 40.0 90 < th dose independent rect. 4 18
881 94.99 humidity 50.0 270 > th dose independent rect. 21 16
889 95.01 humidity 60.0 270 > th dose dependent rect. 23 1
908 95.10 precipitation 0.1 270 < th dose independent rect. 13 8
909 95.10 precipitation 0.1 270 < th dose dependent rect. 13 8
952 95.26 wind 1.0 270 > th dose independent rect. 20 7
975 95.42 temperature 10.0 30 > th dose independent rect. 4 5
977 95.42 temperature 30.0 30 < th dose independent rect. 4 5
978 95.42 humidity 50.0 30 > th dose independent rect. 4 5
980 95.42 atmosphere 995.0 30 > th dose independent rect. 4 5
981 95.42 atmosphere 1015.0 30 < th dose independent rect. 4 5
983 95.42 temperature 10.0 30 > th dose independent rect. 9 19
989 95.46 radiation 1.0 30 > th dose independent sin 10 NA