Os03g0791500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Longin domain containing protein.
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Os03g0791500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Longin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.86 | 0.293 | 10.2 | -0.388 | 0.397 | -0.428 | -0.352 | 1.46 | 0.0248 | 4.7 | 21.36 | 1753 | -- | -- |
| 40.06 | 0.297 | 10.2 | -0.188 | 0.448 | -0.767 | -0.357 | -- | 0.0732 | 4.23 | 21.36 | 1753 | -- | -- |
| 39.18 | 0.292 | 10.2 | -0.383 | 0.392 | -0.438 | -- | 1.47 | 0.0274 | 4.74 | 21.3 | 1719 | -- | -- |
| 40.36 | 0.296 | 10.2 | -0.341 | 0.382 | -0.697 | -- | -- | 0.0272 | 5.12 | 20.43 | 3057 | -- | -- |
| 47.3 | 0.32 | 10.2 | -0.363 | -- | -0.462 | -- | 1.5 | 0.0394 | -- | 21.3 | 1569 | -- | -- |
| 45.29 | 0.315 | 10.2 | -0.0544 | 0.399 | -- | -0.36 | -- | 0.142 | 4.78 | -- | -- | -- | -- |
| 45.63 | 0.316 | 10.2 | -0.0528 | 0.397 | -- | -- | -- | 0.144 | 4.83 | -- | -- | -- | -- |
| 47.67 | 0.322 | 10.2 | -0.338 | -- | -0.786 | -- | -- | 0.0296 | -- | 20.27 | 2753 | -- | -- |
| 41.45 | 0.301 | 10.2 | -- | 0.428 | -0.749 | -- | -- | 0.11 | 4.42 | 20.43 | 3057 | -- | -- |
| 53.94 | 0.343 | 10.2 | -0.038 | -- | -- | -- | -- | 0.154 | -- | -- | -- | -- | -- |
| 45.7 | 0.316 | 10.2 | -- | 0.396 | -- | -- | -- | 0.15 | 4.83 | -- | -- | -- | -- |
| 49.83 | 0.329 | 10.2 | -- | -- | -0.565 | -- | -- | 0.103 | -- | 19.8 | 2698 | -- | -- |
| 53.98 | 0.343 | 10.2 | -- | -- | -- | -- | -- | 0.158 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.98 | temperature | 15 | 10 | > th | dose dependent | sin | 12 | NA |
| 19 | 37.57 | temperature | 20 | 30 | > th | dose independent | sin | 11 | NA |
| 23 | 37.65 | temperature | 30 | 10 | < th | dose dependent | sin | 11 | NA |
| 29 | 37.70 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 19 |
| 30 | 37.71 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 21 |
| 32 | 37.73 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 14 |
| 42 | 37.84 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 12 |
| 49 | 37.87 | temperature | 20 | 30 | < th | dose independent | sin | 10 | NA |
| 53 | 37.93 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 14 |
| 56 | 37.96 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 82 | 38.11 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 88 | 38.17 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 8 |
| 97 | 38.22 | temperature | 20 | 90 | > th | dose independent | rect. | 12 | 23 |
| 101 | 38.23 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 9 |
| 103 | 38.24 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 10 |
| 123 | 38.30 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 12 |
| 129 | 38.31 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 141 | 38.35 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 14 |
| 144 | 38.35 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 12 |
| 150 | 38.36 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 14 |
| 180 | 38.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 210 | 38.50 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 239 | 38.56 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 23 |
| 243 | 38.58 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 254 | 38.61 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 261 | 38.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 6 |
| 276 | 38.66 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 20 |
| 302 | 38.70 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 321 | 38.71 | temperature | 20 | 10 | < th | dose dependent | rect. | 20 | 14 |
| 326 | 38.71 | temperature | 20 | 30 | < th | dose dependent | rect. | 12 | 22 |
| 337 | 38.72 | temperature | 20 | 30 | < th | dose dependent | rect. | 17 | 17 |
| 355 | 38.74 | humidity | 90 | 14400 | > th | dose dependent | sin | 3 | NA |
| 365 | 38.75 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 13 |
| 395 | 38.77 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 17 |
| 398 | 38.77 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 15 |
| 415 | 38.79 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 13 |
| 430 | 38.80 | temperature | 20 | 30 | < th | dose dependent | rect. | 20 | 10 |
| 435 | 38.80 | temperature | 20 | 30 | < th | dose dependent | rect. | 12 | 19 |
| 486 | 38.82 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 517 | 38.83 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 22 |
| 518 | 38.83 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 546 | 38.84 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 553 | 38.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 555 | 38.85 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 571 | 38.86 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 1 |
| 604 | 38.86 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 23 |
| 634 | 38.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 16 |
| 660 | 38.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 12 |
| 685 | 38.90 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |
| 686 | 38.90 | humidity | 90 | 14400 | > th | dose independent | sin | 6 | NA |
| 718 | 38.91 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 12 |
| 725 | 38.91 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 17 |
| 744 | 38.92 | temperature | 20 | 1440 | > th | dose independent | sin | 7 | NA |
| 748 | 38.92 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 767 | 38.92 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 15 |
| 777 | 38.93 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 796 | 38.93 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 823 | 38.94 | humidity | 90 | 14400 | > th | dose independent | rect. | 13 | 19 |
| 846 | 38.95 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 8 |
| 860 | 38.95 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 19 |
| 938 | 38.98 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 964 | 38.98 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 3 |