BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0791500 Os03g0791500|J065169M11
         (77 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G11890.1  | chr1:4011509-4012835 FORWARD LENGTH=219            110   2e-25
AT5G52270.1  | chr5:21221643-21222600 REVERSE LENGTH=215           45   6e-06

>AT1G11890.1 | chr1:4011509-4012835 FORWARD LENGTH=219
          Length = 218

 Score =  110 bits (274), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 49/64 (76%), Positives = 57/64 (89%)

Query: 1  MVKLTMVARVTDGLPLAEGLDDGRDQKDADFYKQQAKLLFKNLSKGQHEASRMSIETGPY 60
          MVK+T++ARVTDGLPLAEGLDDGRD  D+D YKQQ K LFKNLS+GQ++ASRMS+ETGPY
Sbjct: 1  MVKMTLIARVTDGLPLAEGLDDGRDLPDSDMYKQQVKALFKNLSRGQNDASRMSVETGPY 60

Query: 61 FFQY 64
           F Y
Sbjct: 61 VFHY 64



>AT5G52270.1 | chr5:21221643-21222600 REVERSE LENGTH=215
          Length = 214

 Score = 45.4 bits (106), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 1  MVKLTMVARVTDGLPLAEGLDDGRDQKDADF--YKQQAKLLFKNLSKGQHEASRMSIETG 58
          MVKLT+V RV DGLPLA+       + +  F  YKQQA+ L K +SK      +M+I   
Sbjct: 1  MVKLTIVGRVEDGLPLAQDQTYVNQEDNTSFLLYKQQAEFLLKQVSKDSLLHPKMTILLD 60

Query: 59 PYFFQY 64
           + F +
Sbjct: 61 HHSFHF 66



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.140    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,611,840
Number of extensions: 51127
Number of successful extensions: 94
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 2
Length of query: 77
Length of database: 11,106,569
Length adjustment: 49
Effective length of query: 28
Effective length of database: 9,763,185
Effective search space: 273369180
Effective search space used: 273369180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 104 (44.7 bits)