Os03g0786000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0786000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.42 | 0.217 | 11.5 | -0.504 | 0.272 | 0.391 | -0.343 | -0.812 | -0.0248 | 2.17 | 19.45 | 1939 | -- | -- |
| 22.47 | 0.221 | 11.5 | -0.359 | 0.258 | 0.46 | -0.29 | -- | -0.00347 | 2.11 | 19.6 | 1438 | -- | -- |
| 21.83 | 0.218 | 11.5 | -0.513 | 0.264 | 0.369 | -- | -0.854 | -0.0242 | 1.9 | 19.6 | 2057 | -- | -- |
| 22.59 | 0.221 | 11.5 | -0.372 | 0.263 | 0.593 | -- | -- | 0.0051 | 1.84 | 19.3 | 1439 | -- | -- |
| 25.51 | 0.235 | 11.5 | -0.476 | -- | 0.376 | -- | -0.718 | -0.0295 | -- | 20.7 | 1098 | -- | -- |
| 27.36 | 0.245 | 11.5 | -0.166 | 0.277 | -- | -0.342 | -- | 0.102 | 2.04 | -- | -- | -- | -- |
| 27.79 | 0.247 | 11.5 | -0.156 | 0.276 | -- | -- | -- | 0.104 | 1.87 | -- | -- | -- | -- |
| 26.16 | 0.238 | 11.5 | -0.419 | -- | 0.646 | -- | -- | 0.00024 | -- | 18.3 | 2398 | -- | -- |
| 25.6 | 0.236 | 11.5 | -- | 0.265 | 0.411 | -- | -- | 0.0569 | 1.54 | 19.4 | 1443 | -- | -- |
| 32.4 | 0.266 | 11.5 | -0.144 | -- | -- | -- | -- | 0.11 | -- | -- | -- | -- | -- |
| 28.43 | 0.249 | 11.5 | -- | 0.273 | -- | -- | -- | 0.121 | 1.86 | -- | -- | -- | -- |
| 29.31 | 0.252 | 11.5 | -- | -- | 0.393 | -- | -- | 0.0698 | -- | 19.63 | 1130 | -- | -- |
| 32.95 | 0.268 | 11.5 | -- | -- | -- | -- | -- | 0.126 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.40 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 3 | 20.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 6 |
| 6 | 20.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 13 | 20.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 28 | 20.56 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 35 | 20.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 67 | 20.68 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 89 | 20.75 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 92 | 20.76 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 161 | 20.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 2 |
| 183 | 20.95 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 276 | 21.15 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 292 | 21.18 | humidity | 80 | 14400 | > th | dose dependent | rect. | 23 | 8 |
| 314 | 21.23 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 2 |
| 323 | 21.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 2 |
| 357 | 21.30 | humidity | 80 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 360 | 21.30 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 17 |
| 471 | 21.42 | humidity | 90 | 14400 | > th | dose dependent | sin | 5 | NA |
| 721 | 21.58 | humidity | 50 | 14400 | > th | dose dependent | rect. | 23 | 4 |
| 733 | 21.59 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 735 | 21.59 | humidity | 50 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 765 | 21.60 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 19 |
| 785 | 21.62 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 853 | 21.66 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 933 | 21.70 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 995 | 21.73 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 12 |