BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0786000 Os03g0786000|AK061286
         (270 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07560.1  | chr3:2411616-2413310 REVERSE LENGTH=305            119   1e-27

>AT3G07560.1 | chr3:2411616-2413310 REVERSE LENGTH=305
          Length = 304

 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/111 (54%), Positives = 71/111 (63%), Gaps = 10/111 (9%)

Query: 165 FWMSFLRVMHGVVNFCGRVAFLFSQNTQAFHMFISALLQLCDRTGMLYGELARFVLRLLG 224
           FW+SFLRVM G VNF GRVA L  QNTQAFHMF+SALLQL DR GMLYGELARFVLR+LG
Sbjct: 194 FWISFLRVMQGAVNFFGRVAMLIDQNTQAFHMFMSALLQLFDRGGMLYGELARFVLRMLG 253

Query: 225 IKTKAKK-----GGVQGAETSSFEGPGHHFAEAPK-----ANNSWDSVWTD 265
           ++T+ +K      G  G           ++ E PK         WD+VW +
Sbjct: 254 VRTRPRKMQQPPQGPNGLPLPHQPHGNQNYLEGPKTAAPGGGGGWDNVWGN 304




 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/70 (62%), Positives = 52/70 (74%), Gaps = 3/70 (4%)

Query: 7  PPKPWERAGTSSGPAPFKPPSGGSTSDIVEASGTAKPGEVV--SAAESNVASNVNSTISR 64
          PPKPWE+ G +SGP PF+PPS  ST+  VEASGTA PGEVV       N A+N+NS +SR
Sbjct: 10 PPKPWEKEGNTSGPNPFRPPSNTSTAGSVEASGTANPGEVVPPPVNRPNTAANMNS-LSR 68

Query: 65 PVPPRPWQQQ 74
          PVP RPW+QQ
Sbjct: 69 PVPARPWEQQ 78



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.131    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,446,180
Number of extensions: 158774
Number of successful extensions: 762
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 760
Number of HSP's successfully gapped: 2
Length of query: 270
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 173
Effective length of database: 8,447,217
Effective search space: 1461368541
Effective search space used: 1461368541
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)