Os03g0784300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Arv1-like protein family protein.
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Os03g0784300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Arv1-like protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.64 | 0.296 | 7.86 | -0.834 | 0.433 | -0.475 | 0.171 | -0.132 | -0.145 | 9.88 | 49 | 6051 | -- | -- |
| 39.66 | 0.293 | 7.86 | -0.832 | 0.433 | -0.512 | 0.166 | -- | -0.147 | 9.87 | 49 | 6070 | -- | -- |
| 39.74 | 0.294 | 7.86 | -0.825 | 0.433 | -0.486 | -- | -0.111 | -0.145 | 9.79 | 49.62 | 5884 | -- | -- |
| 39.75 | 0.294 | 7.86 | -0.826 | 0.433 | -0.515 | -- | -- | -0.147 | 9.78 | 49.38 | 5772 | -- | -- |
| 50.61 | 0.331 | 7.86 | -0.832 | -- | -0.526 | -- | -0.0855 | -0.121 | -- | 49 | 5217 | -- | -- |
| 43.4 | 0.309 | 7.85 | -0.986 | 0.437 | -- | 0.228 | -- | -0.106 | 9.95 | -- | -- | -- | -- |
| 43.59 | 0.309 | 7.85 | -0.978 | 0.438 | -- | -- | -- | -0.106 | 9.84 | -- | -- | -- | -- |
| 50.37 | 0.331 | 7.87 | -0.796 | -- | -0.675 | -- | -- | -0.15 | -- | 50 | 5172 | -- | -- |
| 55.1 | 0.346 | 7.85 | -- | 0.432 | -0.906 | -- | -- | -0.099 | 9.87 | 49.84 | 5772 | -- | -- |
| 55.04 | 0.347 | 7.86 | -0.982 | -- | -- | -- | -- | -0.106 | -- | -- | -- | -- | -- |
| 68.78 | 0.388 | 7.82 | -- | 0.441 | -- | -- | -- | 0.0027 | 10 | -- | -- | -- | -- |
| 64.3 | 0.373 | 7.86 | -- | -- | -1.17 | -- | -- | -0.116 | -- | 50 | 5088 | -- | -- |
| 80.49 | 0.419 | 7.84 | -- | -- | -- | -- | -- | 0.003 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.95 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 5 | 10 |
| 3 | 38.19 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 17 |
| 7 | 38.69 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 21 | 38.88 | wind | 7.0 | 30 | < th | dose independent | rect. | 20 | 15 |
| 27 | 38.96 | wind | 7.0 | 90 | < th | dose independent | rect. | 6 | 17 |
| 29 | 38.98 | wind | 7.0 | 90 | < th | dose independent | rect. | 5 | 10 |
| 30 | 39.00 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 37 | 39.04 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 4 | 7 |
| 45 | 39.11 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 46 | 39.11 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 48 | 39.12 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 69 | 39.16 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 71 | 39.16 | radiation | 20.0 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 72 | 39.16 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 5 |
| 73 | 39.17 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 113 | 39.18 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 117 | 39.18 | temperature | 15.0 | 10 | > th | dose independent | rect. | 20 | 15 |
| 138 | 39.19 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 153 | 39.19 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 163 | 39.21 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 165 | 39.21 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 171 | 39.22 | wind | 1.0 | 30 | > th | dose independent | rect. | 11 | 9 |
| 192 | 39.23 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 3 | 4 |
| 199 | 39.23 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 11 | 9 |
| 214 | 39.23 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 11 | 9 |
| 227 | 39.25 | temperature | 10.0 | 10 | > th | dose independent | rect. | 11 | 9 |
| 229 | 39.25 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 11 | 9 |
| 237 | 39.25 | humidity | 50.0 | 10 | > th | dose independent | rect. | 20 | 15 |
| 238 | 39.25 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 20 | 15 |
| 248 | 39.26 | radiation | 40.0 | 43200 | > th | dose independent | sin | 18 | NA |
| 291 | 39.27 | temperature | 15.0 | 90 | > th | dose independent | rect. | 5 | 10 |
| 308 | 39.27 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 14 |
| 354 | 39.28 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 388 | 39.30 | radiation | 40.0 | 43200 | > th | dose independent | no | NA | NA |
| 399 | 39.30 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 11 | 9 |
| 594 | 39.31 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 12 | 9 |
| 619 | 39.31 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 15 |
| 622 | 39.31 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 15 |
| 760 | 39.33 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 23 | 7 |
| 802 | 39.34 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 869 | 39.36 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 5 |
| 914 | 39.38 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 927 | 39.38 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 20 | 15 |
| 946 | 39.39 | wind | 3.0 | 10 | < th | dose independent | rect. | 3 | 16 |
| 957 | 39.40 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 15 | 1 |