BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0784300 Os03g0784300|Os03g0784300
         (259 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G01020.1  | chr1:6915-8666 REVERSE LENGTH=246                  125   2e-29
AT4G01510.1  | chr4:642755-644190 FORWARD LENGTH=229              114   4e-26

>AT1G01020.1 | chr1:6915-8666 REVERSE LENGTH=246
          Length = 245

 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/191 (39%), Positives = 102/191 (53%), Gaps = 43/191 (22%)

Query: 103 DTCKAVADPYIECEFMIILIDLILHKTRAYRHLLFNKLR---------------IYSSLD 147
             CK VAD YIECE MII IDLILH+ + YRH+L+N +                 Y  LD
Sbjct: 33  GNCKEVADEYIECERMIIFIDLILHRPKVYRHVLYNAINPATVNIQHLLWKLVFAYLLLD 92

Query: 148 -------------------------KVLGDALLGNIVFMTMLFLEVQFILKLSFDIRRYR 182
                                    KVL   L  N  F+    +  + +L    ++ R R
Sbjct: 93  CYRSLLLRKSDEESSFSDSPVLLSIKVLIGVLSANAAFIISFAIATKGLLN---EVSRRR 149

Query: 183 EVLLAVIISSYFKLFLMAMMVWEFPSSVIFFVEISVLSSNTVALRVVTEFSKAHCFGVCF 242
           E++L + ISSYFK+FL+AM+VWEFP SVIFFV+I +L+SN++AL+V+TE +   C  VC 
Sbjct: 150 EIMLGIFISSYFKIFLLAMLVWEFPMSVIFFVDILLLTSNSMALKVMTESTMTRCIAVCL 209

Query: 243 GAHAARYLTER 253
            AH  R+L  +
Sbjct: 210 IAHLIRFLVGQ 220



>AT4G01510.1 | chr4:642755-644190 FORWARD LENGTH=229
          Length = 228

 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/187 (41%), Positives = 110/187 (58%), Gaps = 36/187 (19%)

Query: 103 DTCKAVADPYIECEFMIILIDLILHKTRAYRHLLFNKLRIYSSLDK------VLGDALL- 155
           + C+ VAD Y+ECE +II IDLILHKT+AYRHLL+N +   S+  +      VL   LL 
Sbjct: 33  ENCEEVADEYVECELLIIFIDLILHKTKAYRHLLYNVVNQESANVQHLLWKLVLAYLLLD 92

Query: 156 ------------GNIVFMTMLFLEVQFIL-----------------KLSFDIRRYREVLL 186
                       G+ V M+ LF  ++ ++                 KL   + R +E+LL
Sbjct: 93  TYRSLLLRRTNDGSNVSMSFLFESLEVLVNVLSANFAFVFSFAFAAKLMLVMPRGKEILL 152

Query: 187 AVIISSYFKLFLMAMMVWEFPSSVIFFVEISVLSSNTVALRVVTEFSKAHCFGVCFGAHA 246
            ++ISSY K+FL AM VWEFP SVIF V++ VL+SN VAL+V+TE + + C  VCF AH+
Sbjct: 153 TILISSYVKIFLFAMPVWEFPVSVIFIVDMLVLTSNAVALKVMTESATSRCLAVCFIAHS 212

Query: 247 ARYLTER 253
            R+L ++
Sbjct: 213 IRFLVDQ 219



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.330    0.141    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,591,425
Number of extensions: 144680
Number of successful extensions: 337
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 2
Length of query: 259
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 163
Effective length of database: 8,474,633
Effective search space: 1381365179
Effective search space used: 1381365179
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 110 (47.0 bits)