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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0780500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP dehydrogenase) (IMPDH) (IMPD).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0262) R2 : 0.888
β1 : 1.68 (0.0956) R2dD : 0.0796 R2D : 0.0633
β2 : 2.8 (0.0919) R2dC : 0.425 R2C : 0.705
β3 : -1.35 (0.0878) R2dE : 0.113 R2E : 0.395
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.132 (0.0561) R2dN8 : 0.00172 R2N8 : -0.00753
σ : 0.488
deviance : 109.78
__
_____
C
peak time of C : 17.1
E
wheather : wind
threshold : 5.071
memory length : 287
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.29
open length of G : 2.18

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
110.87 0.495 10.7 1.67 2.75 -1.47 0.302 -0.24 0.121 17 5.206 282 2.96 2.88
110.13 0.489 10.7 1.66 2.73 -1.4 0.385 -- 0.144 17.1 5.3 293 2.99 2.55
109.97 0.488 10.7 1.71 2.71 -1.43 -- -0.288 0.167 17.1 5.38 291 3.07 2.42
109.78 0.488 10.7 1.68 2.8 -1.35 -- -- 0.132 17.1 5.071 287 3.29 2.18
235.38 0.715 10.6 1.66 -- -2.98 -- -1.69 0.306 -- 5.901 430 0.583 3.85
162.27 0.597 10.8 1.62 3.79 -- 0.449 -- 0.0272 17.4 -- -- -- --
162.77 0.597 10.8 1.62 3.8 -- -- -- 0.0292 17.4 -- -- -- --
213.35 0.68 10.6 1.67 -- -3.14 -- -- 0.317 -- 6.401 448 0.0166 4.86
184.11 0.632 10.8 -- 2.87 -1.27 -- -- -0.0358 17.1 5.596 279 3.39 2.13
913.57 1.41 10.7 1.49 -- -- -- -- -0.0645 -- -- -- -- --
232.09 0.713 10.8 -- 3.77 -- -- -- -0.151 17.4 -- -- -- --
289.35 0.792 10.7 -- -- -3.29 -- -- 0.102 -- 15.76 426 0.0167 5.33
972.42 1.46 10.8 -- -- -- -- -- -0.23 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 111.35 wind 5.0 270 < th dose independent rect. 3 3
2 111.84 temperature 15.0 270 > th dose independent rect. 16 14
4 112.89 wind 9.0 270 < th dose independent rect. 6 21
5 112.91 precipitation 0.1 270 < th dose independent rect. 3 3
6 112.91 precipitation 0.1 270 < th dose dependent rect. 3 3
8 113.22 precipitation 0.1 270 < th dose independent rect. 6 21
9 113.22 precipitation 0.1 270 < th dose dependent rect. 6 21
11 113.78 temperature 10.0 270 > th dose independent rect. 3 3
13 113.78 temperature 30.0 270 < th dose independent rect. 3 3
14 113.78 humidity 50.0 270 > th dose independent rect. 3 3
17 113.78 atmosphere 995.0 270 > th dose independent rect. 3 3
18 113.78 atmosphere 1015.0 270 < th dose independent rect. 3 3
19 113.78 radiation 20.0 270 < th dose independent rect. 3 3
22 113.78 temperature 10.0 270 > th dose independent rect. 6 21
23 113.83 wind 5.0 270 < th dose independent rect. 4 1
27 113.99 wind 9.0 270 < th dose dependent rect. 3 3
28 114.08 radiation 40.0 270 < th dose dependent rect. 3 3
32 114.67 radiation 30.0 270 < th dose dependent rect. 2 7
33 114.86 precipitation 0.1 90 < th dose independent rect. 8 20
34 114.86 precipitation 0.1 90 < th dose dependent rect. 8 20
38 115.10 temperature 15.0 270 > th dose independent rect. 1 21
42 115.15 wind 9.0 90 < th dose independent rect. 8 20
43 115.19 radiation 30.0 90 < th dose independent rect. 4 5
47 115.37 precipitation 0.1 270 < th dose independent rect. 4 1
48 115.37 precipitation 0.1 270 < th dose dependent rect. 4 1
58 115.40 temperature 10.0 90 > th dose independent rect. 8 20
59 115.59 wind 9.0 270 < th dose independent rect. 5 23
61 115.77 wind 5.0 270 < th dose independent rect. 2 5
63 115.84 temperature 10.0 270 > th dose independent rect. 4 1
65 115.84 temperature 30.0 270 < th dose independent rect. 4 1
66 115.84 humidity 50.0 270 > th dose independent rect. 4 1
69 115.84 atmosphere 995.0 270 > th dose independent rect. 4 1
70 115.84 atmosphere 1010.0 270 < th dose independent rect. 4 1
72 115.84 radiation 20.0 270 < th dose independent rect. 4 1
75 115.84 temperature 10.0 270 > th dose independent rect. 5 23
77 115.88 wind 9.0 270 < th dose dependent rect. 4 1
78 115.93 radiation 40.0 270 < th dose dependent rect. 4 1
87 116.19 radiation 1.0 270 < th dose independent rect. 4 1
116 116.70 humidity 50.0 90 > th dose dependent rect. 21 7
119 116.92 temperature 15.0 270 > th dose independent rect. 2 19
120 116.94 humidity 50.0 270 > th dose dependent rect. 3 3
151 117.39 humidity 50.0 270 > th dose dependent rect. 4 1
157 117.57 radiation 40.0 90 < th dose dependent rect. 4 5
195 118.10 temperature 10.0 270 > th dose dependent rect. 3 3
208 118.24 humidity 60.0 270 > th dose dependent rect. 22 3
295 118.73 temperature 10.0 1440 > th dose independent rect. 5 5
298 118.73 atmosphere 995.0 1440 > th dose independent rect. 5 5
299 118.73 atmosphere 1015.0 1440 < th dose independent rect. 5 5
301 118.73 temperature 10.0 1440 > th dose independent rect. 10 19
305 118.74 temperature 15.0 270 > th dose independent rect. 12 10
320 118.87 wind 9.0 270 < th dose dependent rect. 2 5
327 118.95 radiation 30.0 270 < th dose independent rect. 15 15
340 118.97 radiation 40.0 270 < th dose dependent rect. 15 15
362 119.14 atmosphere 995.0 90 > th dose independent rect. 8 20
368 119.21 wind 9.0 90 < th dose independent rect. 22 6
371 119.23 temperature 10.0 90 > th dose independent rect. 22 6
372 119.23 temperature 30.0 90 < th dose independent rect. 22 6
373 119.23 humidity 50.0 90 > th dose independent rect. 22 6
376 119.23 atmosphere 995.0 90 > th dose independent rect. 22 6
377 119.23 radiation 1.0 90 < th dose independent rect. 22 6
382 119.23 temperature 10.0 90 > th dose independent rect. 4 18
383 119.23 atmosphere 1015.0 90 < th dose independent rect. 4 18
384 119.23 radiation 1.0 90 < th dose dependent rect. 22 6
400 119.39 wind 9.0 270 < th dose independent rect. 6 10
410 119.49 radiation 40.0 90 < th dose dependent rect. 4 18
415 119.54 radiation 40.0 90 < th dose independent rect. 4 18
427 119.61 precipitation 0.1 90 < th dose independent rect. 22 6
429 119.61 precipitation 0.1 90 < th dose dependent rect. 22 6
449 119.77 radiation 40.0 10 < th dose dependent rect. 5 17
451 119.81 precipitation 0.1 270 < th dose independent rect. 6 10
452 119.81 precipitation 0.1 270 < th dose dependent rect. 6 10
456 119.86 atmosphere 1015.0 270 < th dose dependent rect. 4 1
496 119.95 precipitation 0.1 270 < th dose independent rect. 20 6
498 119.95 precipitation 0.1 270 < th dose dependent rect. 20 6
502 119.99 temperature 10.0 270 > th dose independent rect. 6 10
503 119.99 atmosphere 1015.0 270 < th dose independent rect. 6 10
522 120.05 radiation 40.0 90 < th dose dependent rect. 4 7
539 120.06 atmosphere 1015.0 270 < th dose independent rect. 2 18
559 120.19 radiation 1.0 270 < th dose independent rect. 3 16
560 120.20 wind 7.0 270 < th dose independent rect. 19 8
564 120.23 precipitation 0.1 270 < th dose independent rect. 19 8
565 120.23 precipitation 0.1 270 < th dose dependent rect. 19 8
566 120.24 atmosphere 1015.0 30 < th dose dependent rect. 4 5
569 120.27 humidity 50.0 90 > th dose dependent rect. 4 5
571 120.28 temperature 30.0 270 < th dose dependent rect. 4 1
577 120.33 radiation 1.0 270 < th dose dependent rect. 3 16
588 120.35 wind 9.0 90 < th dose independent rect. 4 18
598 120.44 radiation 1.0 270 < th dose independent rect. 3 9
607 120.49 wind 9.0 90 < th dose dependent rect. 21 7
608 120.50 humidity 80.0 270 > th dose independent rect. 22 3
609 120.50 temperature 15.0 10 > th dose independent rect. 16 17
619 120.59 precipitation 0.1 270 < th dose independent rect. 2 18
620 120.59 precipitation 0.1 270 < th dose dependent rect. 2 18
621 120.60 temperature 10.0 270 > th dose independent rect. 19 8
622 120.60 temperature 30.0 270 < th dose independent rect. 19 8
623 120.60 humidity 50.0 270 > th dose independent rect. 19 8
625 120.60 atmosphere 995.0 270 > th dose independent rect. 19 8
626 120.60 radiation 1.0 270 < th dose independent rect. 19 8
633 120.60 temperature 10.0 270 > th dose dependent rect. 4 1
635 120.60 radiation 1.0 270 < th dose dependent rect. 19 8
644 120.71 precipitation 0.1 270 < th dose independent rect. 3 16
646 120.71 precipitation 0.1 270 < th dose dependent rect. 3 16
665 120.80 atmosphere 995.0 270 > th dose independent rect. 6 9
700 120.99 atmosphere 995.0 270 > th dose independent rect. 16 14
702 121.00 atmosphere 995.0 270 > th dose independent rect. 2 18
706 121.03 radiation 1.0 270 < th dose dependent rect. 3 9
708 121.06 wind 9.0 270 < th dose independent rect. 16 14
713 121.11 atmosphere 995.0 90 > th dose independent rect. 4 18
716 121.12 precipitation 0.1 90 < th dose independent rect. 4 18
718 121.12 precipitation 0.1 90 < th dose dependent rect. 4 18
752 121.40 radiation 20.0 90 < th dose independent rect. 4 18
761 121.48 wind 9.0 270 < th dose independent rect. 2 18
785 121.53 temperature 15.0 270 > th dose independent rect. 10 23
797 121.67 temperature 10.0 270 > th dose independent rect. 22 3
798 121.67 temperature 30.0 270 < th dose independent rect. 22 3
799 121.67 humidity 50.0 270 > th dose independent rect. 22 3
802 121.67 atmosphere 995.0 270 > th dose independent rect. 22 3
803 121.67 radiation 1.0 270 < th dose independent rect. 22 3
809 121.67 radiation 1.0 270 < th dose dependent rect. 22 3
823 121.74 atmosphere 995.0 270 > th dose independent rect. 6 21
826 121.75 precipitation 0.1 270 < th dose independent rect. 22 3
827 121.75 precipitation 0.1 270 < th dose dependent rect. 22 3
836 121.86 wind 9.0 270 < th dose dependent rect. 21 4
878 121.97 humidity 50.0 270 > th dose dependent rect. 2 5
921 122.19 wind 9.0 1440 < th dose independent rect. 5 4
925 122.19 humidity 50.0 1440 > th dose independent rect. 5 4
939 122.23 temperature 10.0 30 > th dose dependent rect. 9 19
950 122.32 precipitation 0.1 270 < th dose independent rect. 15 15
952 122.32 precipitation 0.1 270 < th dose dependent rect. 15 15