BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0780500 Os03g0780500|AK061643
(220 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G16350.1 | chr1:5590951-5592872 FORWARD LENGTH=503 384 e-107
AT1G79470.1 | chr1:29894772-29896661 REVERSE LENGTH=504 371 e-103
>AT1G16350.1 | chr1:5590951-5592872 FORWARD LENGTH=503
Length = 502
Score = 384 bits (987), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/219 (84%), Positives = 203/219 (92%)
Query: 2 YPEVDLIGGNVVTIAQAQNLVASGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASY 61
YPE+D++GGNVVT+ QA+NL+ +GVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKV++
Sbjct: 284 YPELDVVGGNVVTMYQAENLIKAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSTL 343
Query: 62 AKDHNVPVIADGGISNSGHIVKALSLGASTVMMGSFLAGSHEAPGTYEYKDGHRVKKYRG 121
A H VPVIADGGISNSGHIVKAL LGASTVMMGSFLAGS EAPG YEY++G RVKKYRG
Sbjct: 344 AAQHGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYEYRNGRRVKKYRG 403
Query: 122 MGSLEAMTKGSDARYLGDTLKLKVAQGVVGAVADKGSVLRFIPYTMQAVKQGFQDLGASS 181
MGSLEAMTKGSD RYLGDT KLK+AQGVVGAVADKGSVL+FIPYTM AVKQGFQDLGASS
Sbjct: 404 MGSLEAMTKGSDQRYLGDTAKLKIAQGVVGAVADKGSVLKFIPYTMHAVKQGFQDLGASS 463
Query: 182 LQSAHELLRSETIKLEVRTGAAQVEGGIHGLVSYEKKAF 220
LQSAHELLR T++LE RTGAAQ+EGGIHGLVSYEKK+F
Sbjct: 464 LQSAHELLRDNTLRLEARTGAAQIEGGIHGLVSYEKKSF 502
>AT1G79470.1 | chr1:29894772-29896661 REVERSE LENGTH=504
Length = 503
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 183/219 (83%), Positives = 197/219 (89%)
Query: 2 YPEVDLIGGNVVTIAQAQNLVASGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASY 61
YPE+D+IGGNVVT+ QAQNL+ +GVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKV S
Sbjct: 285 YPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVCSI 344
Query: 62 AKDHNVPVIADGGISNSGHIVKALSLGASTVMMGSFLAGSHEAPGTYEYKDGHRVKKYRG 121
A +PVIADGGISNSGHIVKAL LGASTVMMGSFLAGS EAPG YEY +G R+KKYRG
Sbjct: 345 AAQSGIPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGGYEYTNGKRIKKYRG 404
Query: 122 MGSLEAMTKGSDARYLGDTLKLKVAQGVVGAVADKGSVLRFIPYTMQAVKQGFQDLGASS 181
MGSLEAMTKGSD RYLGD KLK+AQGVVGAVADKGSVL+ IPYTM AVKQGFQDLGASS
Sbjct: 405 MGSLEAMTKGSDQRYLGDQTKLKIAQGVVGAVADKGSVLKLIPYTMHAVKQGFQDLGASS 464
Query: 182 LQSAHELLRSETIKLEVRTGAAQVEGGIHGLVSYEKKAF 220
LQSAH LLRS ++LE RTGAAQVEGG+HGLVSYEKK+F
Sbjct: 465 LQSAHGLLRSNILRLEARTGAAQVEGGVHGLVSYEKKSF 503
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.132 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,371,694
Number of extensions: 172967
Number of successful extensions: 421
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 421
Number of HSP's successfully gapped: 2
Length of query: 220
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 125
Effective length of database: 8,502,049
Effective search space: 1062756125
Effective search space used: 1062756125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)