Os03g0780400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Actin-depolymerizing factor 6 (ADF-6) (AtADF6).
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Os03g0780400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Actin-depolymerizing factor 6 (ADF-6) (AtADF6).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.89 | 0.204 | 14 | 0.396 | 0.455 | 0.239 | -0.506 | 0.173 | 0.233 | 4.69 | 24.9 | 259 | -- | -- |
| 18.97 | 0.203 | 14 | 0.448 | 0.452 | 0.247 | -0.419 | -- | 0.251 | 4.72 | 24.8 | 257 | -- | -- |
| 19.44 | 0.205 | 14 | 0.437 | 0.439 | 0.242 | -- | -0.00853 | 0.244 | 4.9 | 25 | 253 | -- | -- |
| 19.4 | 0.205 | 14 | 0.455 | 0.455 | 0.241 | -- | -- | 0.255 | 4.9 | 24.8 | 254 | -- | -- |
| 25.98 | 0.237 | 13.9 | 0.557 | -- | 0.465 | -- | -0.132 | 0.351 | -- | 25.29 | 253 | -- | -- |
| 22.07 | 0.22 | 14 | 0.374 | 0.614 | -- | -0.323 | -- | 0.128 | 4.81 | -- | -- | -- | -- |
| 22.33 | 0.221 | 14 | 0.376 | 0.613 | -- | -- | -- | 0.13 | 4.89 | -- | -- | -- | -- |
| 26.03 | 0.238 | 13.9 | 0.52 | -- | 0.457 | -- | -- | 0.339 | -- | 25.24 | 250 | -- | -- |
| 24.46 | 0.23 | 14 | -- | 0.508 | 0.172 | -- | -- | 0.169 | 4.88 | 24.9 | 249 | -- | -- |
| 42.13 | 0.303 | 14 | 0.399 | -- | -- | -- | -- | 0.146 | -- | -- | -- | -- | -- |
| 26.06 | 0.239 | 14 | -- | 0.62 | -- | -- | -- | 0.0879 | 4.87 | -- | -- | -- | -- |
| 32.98 | 0.267 | 14 | -- | -- | 0.41 | -- | -- | 0.262 | -- | 25.27 | 245 | -- | -- |
| 46.32 | 0.318 | 14 | -- | -- | -- | -- | -- | 0.101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.67 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 2 | 16.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 9 | 16.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 15 | 17.10 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 19 |
| 44 | 17.34 | temperature | 30 | 90 | < th | dose dependent | sin | 3 | NA |
| 45 | 17.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 14 |
| 102 | 17.60 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 14 |
| 110 | 17.64 | temperature | 25 | 270 | < th | dose independent | sin | 7 | NA |
| 119 | 17.68 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 187 | 17.98 | temperature | 20 | 90 | > th | dose dependent | sin | 5 | NA |
| 232 | 18.13 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 384 | 18.40 | temperature | 25 | 720 | < th | dose dependent | sin | 0 | NA |
| 410 | 18.43 | temperature | 25 | 270 | > th | dose independent | sin | 7 | NA |
| 418 | 18.44 | temperature | 10 | 90 | > th | dose dependent | sin | 3 | NA |
| 426 | 18.45 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 11 | 9 |
| 430 | 18.46 | temperature | 10 | 10 | > th | dose dependent | sin | 2 | NA |
| 446 | 18.47 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 452 | 18.48 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 13 |
| 490 | 18.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 501 | 18.53 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 19 |
| 571 | 18.60 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 678 | 18.70 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 782 | 18.79 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 21 |
| 788 | 18.79 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 822 | 18.81 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 22 |
| 845 | 18.83 | temperature | 25 | 270 | > th | dose independent | rect. | 15 | 23 |
| 908 | 18.87 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 921 | 18.87 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 3 | 18 |
| 928 | 18.88 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 12 | 11 |
| 953 | 18.90 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 9 |
| 978 | 18.91 | temperature | 25 | 270 | > th | dose independent | rect. | 20 | 23 |
| 987 | 18.91 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 2 | 16 |