Os03g0780200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0780200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 235.96 | 0.722 | 8.18 | 0.446 | 2.69 | -2.24 | -0.657 | -0.861 | 0.242 | 10 | 26.84 | 11 | 1 | 20.9 |
| 237.1 | 0.717 | 8.19 | 0.346 | 2.72 | -2.19 | -0.728 | -- | 0.231 | 10 | 27.21 | 11 | 0.984 | 20.9 |
| 237.6 | 0.718 | 8.18 | 0.438 | 2.69 | -2.23 | -- | -0.994 | 0.244 | 10 | 26.85 | 11 | 1.03 | 20.9 |
| 239.17 | 0.72 | 8.19 | 0.333 | 2.71 | -2.15 | -- | -- | 0.236 | 10 | 27.21 | 11 | 1.1 | 20.8 |
| 545.34 | 1.09 | 8.33 | -0.116 | -- | -2.93 | -- | 0.792 | -0.0216 | -- | 29.8 | 2 | 1.38 | 24 |
| 312.3 | 0.828 | 8.12 | 0.735 | 2.58 | -- | -0.386 | -- | 0.578 | 10.6 | -- | -- | -- | -- |
| 312.91 | 0.828 | 8.12 | 0.72 | 2.59 | -- | -- | -- | 0.577 | 10.6 | -- | -- | -- | -- |
| 546.16 | 1.09 | 8.31 | 0.017 | -- | -2.94 | -- | -- | 0.0109 | -- | 29.79 | 2 | 2.51 | 24 |
| 242.07 | 0.725 | 8.19 | -- | 2.7 | -2.17 | -- | -- | 0.227 | 10 | 27.2 | 11 | 1.1 | 20.8 |
| 723.75 | 1.26 | 8.19 | 0.673 | -- | -- | -- | -- | 0.565 | -- | -- | -- | -- | -- |
| 326.56 | 0.845 | 8.14 | -- | 2.58 | -- | -- | -- | 0.497 | 10.5 | -- | -- | -- | -- |
| 546.17 | 1.09 | 8.32 | -- | -- | -2.94 | -- | -- | 0.00915 | -- | 29.79 | 2 | 2.06 | 24 |
| 735.69 | 1.27 | 8.21 | -- | -- | -- | -- | -- | 0.491 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 240.99 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 2 | 241.50 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 4 | 242.19 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 5 | 242.30 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 21 |
| 45 | 246.16 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 11 |
| 47 | 246.20 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 58 | 246.67 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 8 |
| 61 | 246.73 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 8 |
| 74 | 247.25 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 17 |
| 85 | 247.59 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 16 |
| 99 | 247.76 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 10 |
| 114 | 247.95 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 13 |
| 116 | 248.00 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 8 |
| 129 | 248.18 | wind | 7 | 43200 | > th | dose independent | sin | 15 | NA |
| 137 | 248.26 | wind | 7 | 43200 | < th | dose independent | sin | 15 | NA |
| 161 | 248.48 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 17 |
| 171 | 248.72 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 177 | 248.85 | wind | 5 | 43200 | > th | dose dependent | sin | 16 | NA |
| 184 | 248.93 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 366 | 251.11 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 4 |
| 408 | 251.76 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 10 |
| 410 | 251.78 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 18 |
| 411 | 251.79 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 16 |
| 414 | 251.79 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 20 |
| 422 | 251.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 13 |
| 444 | 252.00 | temperature | 15 | 30 | > th | dose dependent | rect. | 4 | 21 |
| 537 | 252.61 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 540 | 252.63 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 15 |
| 676 | 253.50 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 703 | 253.73 | temperature | 25 | 10 | < th | dose dependent | sin | 1 | NA |
| 757 | 254.14 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 770 | 254.20 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 16 |
| 779 | 254.24 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 16 |
| 848 | 254.45 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 19 |
| 884 | 254.61 | temperature | 30 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 911 | 254.69 | temperature | 25 | 1440 | > th | dose dependent | rect. | 24 | 22 |
| 975 | 254.82 | temperature | 30 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 997 | 254.85 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |