BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0780200 Os03g0780200|AK107920
         (71 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G31335.1  | chr1:11217117-11217329 REVERSE LENGTH=71            62   6e-11

>AT1G31335.1 | chr1:11217117-11217329 REVERSE LENGTH=71
          Length = 70

 Score = 62.0 bits (149), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 34/43 (79%), Gaps = 2/43 (4%)

Query: 1  MGFVLVISLPFIFFSILLGFGCYFLGKHKGREEMRTGVGAQVY 43
          MG V+VISLP IFF +LLGFGCYFLGK +GR E+RT    QVY
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKSRGRREIRT--NPQVY 41



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.331    0.151    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,131,438
Number of extensions: 26472
Number of successful extensions: 79
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 71
Length of database: 11,106,569
Length adjustment: 43
Effective length of query: 28
Effective length of database: 9,927,681
Effective search space: 277975068
Effective search space used: 277975068
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 104 (44.7 bits)