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Os03g0778100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Photosystem-1 F subunit.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 16.8 (0.0181) R2 : 0.421
β1 : -0.809 (0.0664) R2dD : 0.196 R2D : 0.00691
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.604 (0.0387) R2dN8 : 0.414 R2N8 : 0.226
σ : 0.34
deviance : 52.96
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
39.17 0.292 16.9 -1.44 0.336 -1.95 -0.74 8.55 -0.562 16.4 1000 10 -- --
39.95 0.294 16.8 -0.866 0.337 -0.478 -0.725 -- -0.562 16.5 999.6 7 -- --
40.24 0.295 16.9 -1.47 0.343 -2.07 -- 9.2 -0.566 17.1 999.7 18 -- --
41.14 0.299 16.8 -0.858 0.336 -0.481 -- -- -0.571 17.2 999.5 7 -- --
46.4 0.317 16.9 -1.49 -- -2.09 -- 9.24 -0.57 -- 999.7 19 -- --
45.45 0.316 16.8 -0.791 0.343 -- -0.722 -- -0.591 16.5 -- -- -- --
46.61 0.32 16.8 -0.797 0.348 -- -- -- -0.595 17.2 -- -- -- --
46.63 0.319 16.8 -0.879 -- -0.441 -- -- -0.566 -- 1001 30 -- --
60.01 0.361 16.8 -- 0.348 -0.291 -- -- -0.474 17.3 1002 9 -- --
52.96 0.34 16.8 -0.809 -- -- -- -- -0.604 -- -- -- -- --
63.36 0.372 16.8 -- 0.362 -- -- -- -0.506 17.1 -- -- -- --
66.1 0.379 16.7 -- -- -0.335 -- -- -0.473 -- 1002 126 -- --
70.24 0.391 16.8 -- -- -- -- -- -0.514 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 38.39 temperature 30 1440 < th dose independent rect. 10 1
2 38.58 temperature 30 1440 > th dose independent rect. 10 1
3 38.63 atmosphere 1000 720 > th dose independent rect. 14 17
4 38.64 atmosphere 1000 720 > th dose independent rect. 19 8
5 38.65 atmosphere 1000 720 > th dose independent sin 11 NA
10 38.74 temperature 25 4320 > th dose dependent rect. 23 1
11 38.75 wind 1 14400 < th dose dependent rect. 9 3
14 38.82 temperature 25 4320 > th dose independent rect. 23 2
17 38.84 atmosphere 1000 720 > th dose independent sin 14 NA
19 38.87 atmosphere 1000 720 > th dose independent rect. 19 16
20 38.89 wind 1 14400 < th dose independent rect. 9 3
22 38.91 temperature 25 4320 < th dose independent rect. 23 3
30 39.01 atmosphere 1000 720 > th dose independent rect. 15 20
31 39.01 atmosphere 1000 270 < th dose independent rect. 18 22
34 39.03 atmosphere 1000 10 > th dose independent sin 7 NA
38 39.04 temperature 25 4320 < th dose independent rect. 1 1
46 39.08 temperature 30 1440 < th dose independent rect. 3 8
48 39.08 humidity 80 14400 < th dose dependent rect. 4 1
49 39.09 atmosphere 1000 90 > th dose independent sin 9 NA
60 39.11 temperature 25 4320 < th dose independent rect. 23 5
63 39.11 atmosphere 1000 270 > th dose independent rect. 22 23
73 39.13 atmosphere 1000 270 < th dose independent rect. 10 22
74 39.13 atmosphere 1000 10 < th dose independent rect. 19 23
75 39.13 atmosphere 1000 10 < th dose independent rect. 23 23
80 39.15 temperature 30 1440 < th dose independent rect. 1 10
84 39.15 atmosphere 1000 10 < th dose independent rect. 11 23
85 39.15 atmosphere 1000 10 < th dose independent rect. 13 23
86 39.15 atmosphere 1000 10 < th dose independent rect. 21 23
87 39.16 temperature 25 4320 < th dose independent rect. 23 8
88 39.16 temperature 30 1440 < th dose independent rect. 23 12
94 39.17 atmosphere 1000 10 > th dose independent no NA NA
96 39.17 atmosphere 1000 10 < th dose independent no NA NA
101 39.17 atmosphere 1000 10 < th dose independent rect. 17 23
110 39.18 atmosphere 1000 10 < th dose independent rect. 15 23
120 39.19 atmosphere 1000 30 < th dose independent rect. 1 23
127 39.20 atmosphere 1000 10 < th dose independent rect. 3 23
129 39.20 atmosphere 1000 30 < th dose independent rect. 5 23
130 39.20 atmosphere 1000 30 < th dose independent rect. 7 23
131 39.20 atmosphere 1000 10 < th dose independent rect. 9 23
141 39.22 temperature 30 1440 < th dose independent rect. 19 16
146 39.22 temperature 25 4320 > th dose dependent rect. 23 9
155 39.23 atmosphere 1000 270 < th dose independent rect. 13 23
207 39.30 atmosphere 1000 720 > th dose independent rect. 9 18
214 39.30 atmosphere 995 90 > th dose dependent rect. 24 23
249 39.34 atmosphere 1000 10 > th dose independent sin 3 NA
291 39.38 temperature 25 4320 < th dose independent rect. 3 1
302 39.38 atmosphere 995 270 > th dose dependent rect. 24 21
335 39.41 temperature 30 14400 > th dose dependent rect. 8 1
357 39.42 temperature 25 4320 > th dose independent rect. 23 8
370 39.42 wind 9 14400 > th dose dependent rect. 13 1
378 39.43 wind 9 14400 > th dose dependent rect. 3 11
381 39.44 wind 9 14400 > th dose independent rect. 13 1
382 39.44 wind 1 14400 > th dose independent rect. 9 4
397 39.45 atmosphere 1000 270 > th dose independent rect. 8 23
399 39.45 humidity 80 14400 < th dose dependent rect. 20 10
520 39.56 atmosphere 1000 720 > th dose independent rect. 23 8
544 39.59 atmosphere 1000 10 < th dose independent sin 7 NA
564 39.60 atmosphere 1000 270 < th dose independent sin 10 NA
566 39.60 temperature 25 4320 < th dose independent rect. 20 8
579 39.61 atmosphere 1000 1440 > th dose independent rect. 21 2
598 39.63 wind 9 14400 > th dose independent rect. 4 10
622 39.65 humidity 80 14400 < th dose dependent rect. 1 1
627 39.66 temperature 30 1440 > th dose dependent rect. 10 1
629 39.67 atmosphere 1000 1440 < th dose independent rect. 21 3
635 39.68 wind 9 14400 < th dose independent rect. 13 1
637 39.68 temperature 25 4320 < th dose independent rect. 20 11
746 39.78 atmosphere 1000 720 < th dose independent sin 14 NA
810 39.82 atmosphere 1000 720 < th dose independent rect. 18 11
814 39.82 atmosphere 1000 270 < th dose independent rect. 17 16
853 39.84 atmosphere 1000 270 > th dose independent rect. 21 12
859 39.84 atmosphere 1000 30 > th dose independent rect. 15 23
882 39.86 temperature 20 720 < th dose independent rect. 3 4
923 39.88 atmosphere 1000 270 > th dose independent rect. 12 23
926 39.89 atmosphere 1000 270 > th dose independent sin 5 NA