BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0778100 Os03g0778100|AK069791
         (225 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G31330.1  | chr1:11215011-11215939 REVERSE LENGTH=222          247   4e-66

>AT1G31330.1 | chr1:11215011-11215939 REVERSE LENGTH=222
          Length = 221

 Score =  247 bits (630), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 116/153 (75%), Positives = 132/153 (86%), Gaps = 11/153 (7%)

Query: 79  DIAGLTPCKESKAFAKREKQSIKKLQSSL-----------AINATIEKTKRRFENYGKFG 127
           DI+GLTPCK+SK FAKREKQ IKKL+SSL           A+NA IEKTKRRF+NYGK+G
Sbjct: 68  DISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPESAPALALNAQIEKTKRRFDNYGKYG 127

Query: 128 LLCGADGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMREII 187
           LLCG+DGLPHLIV+GDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIAISGEKKPAM+EII
Sbjct: 128 LLCGSDGLPHLIVNGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAISGEKKPAMKEII 187

Query: 188 IDVELAVKLLPRGFIWPVAAYRELITGNLVVDD 220
           IDV LA +++ RGFIWPVAAYRE + G+L+  D
Sbjct: 188 IDVPLASRIIFRGFIWPVAAYREFLNGDLIAKD 220



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.141    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,267,042
Number of extensions: 128276
Number of successful extensions: 287
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 286
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 130
Effective length of database: 8,502,049
Effective search space: 1105266370
Effective search space used: 1105266370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)