Os03g0770900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0770900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 468.91 | 1.02 | 3.26 | -0.0942 | 0.161 | -1.24 | -0.0347 | -0.57 | -0.034 | 7.24 | 1002 | 564 | -- | -- |
| 469.38 | 1.01 | 3.27 | -0.105 | 0.164 | -1.25 | -0.0398 | -- | -0.0328 | 7.34 | 1001 | 557 | -- | -- |
| 468.91 | 1.01 | 3.26 | -0.0946 | 0.162 | -1.24 | -- | -0.573 | -0.0341 | 7.14 | 1002 | 561 | -- | -- |
| 469.38 | 1.01 | 3.27 | -0.113 | 0.166 | -1.25 | -- | -- | -0.0348 | 7.17 | 1001 | 547 | -- | -- |
| 470.08 | 1.01 | 3.27 | -0.101 | -- | -1.2 | -- | -0.59 | -0.0322 | -- | 1002 | 708 | -- | -- |
| 495.47 | 1.04 | 3.32 | -0.0375 | 0.139 | -- | 0.194 | -- | -0.275 | 4.26 | -- | -- | -- | -- |
| 495.57 | 1.04 | 3.33 | -0.0392 | 0.142 | -- | -- | -- | -0.276 | 4.63 | -- | -- | -- | -- |
| 470.7 | 1.01 | 3.27 | -0.123 | -- | -1.22 | -- | -- | -0.0329 | -- | 1001 | 694 | -- | -- |
| 469.72 | 1.01 | 3.27 | -- | 0.165 | -1.24 | -- | -- | -0.0232 | 7.18 | 1001 | 539 | -- | -- |
| 496.64 | 1.04 | 3.33 | -0.0338 | -- | -- | -- | -- | -0.272 | -- | -- | -- | -- | -- |
| 495.61 | 1.04 | 3.32 | -- | 0.141 | -- | -- | -- | -0.271 | 4.64 | -- | -- | -- | -- |
| 471.06 | 1.01 | 3.27 | -- | -- | -1.21 | -- | -- | -0.022 | -- | 1001 | 616 | -- | -- |
| 496.67 | 1.04 | 3.33 | -- | -- | -- | -- | -- | -0.268 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 463.12 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 3 | 463.22 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 2 | 7 |
| 7 | 463.34 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 9 | 463.40 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 13 | 463.49 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 16 | 463.65 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 30 | 463.89 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 15 | 18 |
| 31 | 464.02 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 45 | 464.23 | radiation | 30.0 | 30 | > th | dose dependent | rect. | 15 | 17 |
| 53 | 465.06 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 56 | 465.26 | radiation | 20.0 | 30 | > th | dose independent | rect. | 15 | 18 |
| 59 | 465.39 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 62 | 465.78 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 64 | 465.87 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 68 | 465.96 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 7 | 18 |
| 69 | 466.00 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 71 | 466.08 | radiation | 10.0 | 30 | > th | dose dependent | rect. | 15 | 18 |
| 88 | 466.44 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 138 | 466.68 | atmosphere | 1000.0 | 720 | > th | dose dependent | rect. | 1 | 20 |
| 147 | 466.78 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 155 | 466.84 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 156 | 466.84 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 167 | 466.90 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 3 | 22 |
| 170 | 466.93 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 171 | 466.93 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 172 | 466.93 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 194 | 466.97 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 203 | 467.00 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 7 | 13 |
| 234 | 467.11 | temperature | 30.0 | 270 | > th | dose independent | rect. | 16 | 21 |
| 239 | 467.13 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 240 | 467.13 | radiation | 30.0 | 30 | > th | dose dependent | rect. | 15 | 1 |
| 264 | 467.20 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 280 | 467.23 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 7 | 13 |
| 286 | 467.26 | humidity | 70.0 | 90 | < th | dose dependent | rect. | 15 | 1 |
| 296 | 467.40 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 308 | 467.43 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 311 | 467.45 | wind | 5.0 | 10 | > th | dose independent | rect. | 10 | 1 |
| 318 | 467.45 | wind | 5.0 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 350 | 467.61 | temperature | 30.0 | 720 | > th | dose independent | rect. | 8 | 5 |
| 365 | 467.61 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 367 | 467.64 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 372 | 467.66 | atmosphere | 1000.0 | 43200 | < th | dose independent | sin | 3 | NA |
| 397 | 467.76 | atmosphere | 1000.0 | 43200 | > th | dose independent | sin | 3 | NA |
| 398 | 467.76 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 463 | 467.86 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 7 | 13 |
| 467 | 467.87 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 491 | 467.95 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 4 | 16 |
| 495 | 467.96 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 508 | 468.00 | humidity | 70.0 | 30 | < th | dose independent | rect. | 15 | 17 |
| 594 | 468.09 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 598 | 468.10 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 18 | 20 |
| 615 | 468.13 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 639 | 468.15 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 4 | 16 |
| 673 | 468.20 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 9 | 9 |
| 675 | 468.21 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 699 | 468.23 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 18 | 20 |
| 767 | 468.31 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 780 | 468.31 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 4 | 19 |
| 788 | 468.33 | temperature | 30.0 | 720 | < th | dose independent | rect. | 4 | 10 |
| 822 | 468.38 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 23 | 3 |
| 913 | 468.45 | atmosphere | 1015.0 | 720 | < th | dose dependent | rect. | 22 | 21 |
| 929 | 468.47 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 931 | 468.48 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 972 | 468.51 | atmosphere | 1000.0 | 43200 | < th | dose independent | no | NA | NA |
| 973 | 468.51 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 23 | 5 |
| 976 | 468.51 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 18 | 18 |