BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0770900 Os03g0770900|AK106660
         (545 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17000.1  | chr4:9567046-9569913 REVERSE LENGTH=675            129   5e-30

>AT4G17000.1 | chr4:9567046-9569913 REVERSE LENGTH=675
          Length = 674

 Score =  129 bits (323), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 74/97 (76%), Gaps = 1/97 (1%)

Query: 32  FYEDIEAPKFVDLTAPDAARPSDDPSWFCLRIGCDQNHE-HVDPEALHRSFFMRVMAARS 90
           FYE IEAPKFVDLTAPD     DD  WFC R+GCDQ HE  +D EA+++ F +RVMAARS
Sbjct: 17  FYETIEAPKFVDLTAPDHRPEGDDRYWFCSRVGCDQKHEEFLDSEAIYKKFVLRVMAARS 76

Query: 91  PNVRLQKAIRRRNQSSMLKCPHSAPPKPPRSRIARLS 127
           P+VRL+KA+ R++ S   KCP++ P KP RSR+++L+
Sbjct: 77  PSVRLRKALYRKDFSVDPKCPNTVPAKPSRSRVSKLA 113



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.124    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,612,687
Number of extensions: 405316
Number of successful extensions: 1103
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1103
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 442
Effective length of database: 8,282,721
Effective search space: 3660962682
Effective search space used: 3660962682
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 114 (48.5 bits)