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Os03g0767800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cold acclimation WCOR413 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.2 (0.0162) R2 : 0.0531
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.172 (0.034) R2dN8 : 0.0686 R2N8 : 0.0531
σ : 0.304
deviance : 42.52
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
26.92 0.244 13.2 -0.135 0.449 -0.153 0.156 -1.56 0.134 1.9 1005 79 -- --
27.49 0.246 13.2 -0.086 0.439 -0.371 0.182 -- 0.112 1.92 1005 54 -- --
27.01 0.242 13.2 -0.151 0.448 -0.113 -- -1.8 0.14 1.88 1004 79 -- --
27.61 0.246 13.2 -0.0912 0.439 -0.372 -- -- 0.111 1.88 1005 2 -- --
38.88 0.292 13.2 -0.0876 -- -0.331 -- -0.717 0.12 -- 1006 36 -- --
29.81 0.256 13.2 -0.115 0.452 -- 0.186 -- 0.151 1.96 -- -- -- --
29.94 0.256 13.2 -0.121 0.452 -- -- -- 0.15 1.92 -- -- -- --
39.13 0.293 13.2 -0.0722 -- -0.417 -- -- 0.107 -- 1006 2 -- --
27.83 0.247 13.2 -- 0.437 -0.383 -- -- 0.12 1.87 1005 2 -- --
42.25 0.304 13.2 -0.102 -- -- -- -- 0.161 -- -- -- -- --
30.32 0.258 13.2 -- 0.449 -- -- -- 0.164 1.91 -- -- -- --
39.27 0.293 13.2 -- -- -0.425 -- -- 0.114 -- 1006 2 -- --
42.52 0.304 13.2 -- -- -- -- -- 0.172 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 24.73 atmosphere 1000 270 > th dose independent rect. 4 15
5 25.08 temperature 15 270 > th dose dependent rect. 7 8
7 25.09 temperature 10 90 > th dose dependent rect. 9 8
10 25.15 temperature 30 43200 > th dose dependent rect. 8 1
31 25.24 atmosphere 1000 10 > th dose independent rect. 6 15
33 25.27 temperature 30 43200 > th dose independent rect. 8 1
48 25.33 temperature 30 43200 < th dose independent rect. 7 2
49 25.33 temperature 30 43200 < th dose independent rect. 5 4
50 25.33 temperature 30 43200 < th dose independent rect. 3 6
51 25.33 temperature 30 43200 < th dose independent rect. 19 14
56 25.36 temperature 30 43200 < th dose independent rect. 1 8
67 25.44 atmosphere 1010 14400 > th dose independent rect. 23 1
71 25.48 atmosphere 995 90 > th dose dependent rect. 17 16
74 25.52 atmosphere 1010 14400 > th dose independent rect. 21 1
77 25.53 wind 9 14400 < th dose independent rect. 13 2
80 25.57 atmosphere 1010 14400 > th dose independent rect. 21 3
85 25.58 wind 7 14400 > th dose dependent rect. 15 1
92 25.60 wind 7 14400 > th dose dependent rect. 13 3
93 25.60 wind 1 43200 < th dose dependent rect. 9 3
136 25.71 atmosphere 1010 14400 < th dose independent rect. 1 1
145 25.72 atmosphere 1010 14400 > th dose independent rect. 2 1
169 25.76 wind 7 14400 > th dose dependent rect. 13 1
173 25.76 wind 9 14400 > th dose dependent rect. 13 8
174 25.77 atmosphere 1010 14400 < th dose independent rect. 20 2
180 25.78 atmosphere 1010 14400 > th dose independent sin 13 NA
198 25.81 atmosphere 1010 14400 < th dose independent rect. 20 7
223 25.82 wind 5 43200 < th dose dependent rect. 13 1
237 25.84 wind 9 14400 > th dose independent rect. 13 2
278 25.86 atmosphere 1005 720 < th dose dependent rect. 6 7
281 25.87 atmosphere 1010 14400 < th dose independent rect. 18 4
311 25.88 atmosphere 1005 720 < th dose dependent rect. 7 4
317 25.89 wind 1 43200 < th dose independent rect. 9 4
329 25.89 atmosphere 1005 90 < th dose dependent rect. 8 10
331 25.90 temperature 25 43200 > th dose independent rect. 5 1
350 25.90 wind 9 14400 > th dose dependent rect. 20 19
351 25.91 atmosphere 1010 14400 < th dose independent sin 13 NA
353 25.91 atmosphere 1010 14400 < th dose independent rect. 18 1
356 25.91 temperature 25 43200 < th dose independent rect. 4 2
387 25.91 wind 9 14400 > th dose dependent rect. 18 21
466 25.94 temperature 25 43200 > th dose independent rect. 21 1
494 25.95 wind 3 43200 > th dose independent rect. 13 1
496 25.95 temperature 25 43200 < th dose independent rect. 21 1
497 25.95 wind 1 43200 < th dose independent rect. 10 2
530 25.95 wind 1 14400 < th dose dependent rect. 9 5
531 25.95 atmosphere 995 30 > th dose dependent rect. 4 17
562 25.97 atmosphere 1010 14400 > th dose independent rect. 18 1
585 25.98 wind 9 14400 > th dose independent rect. 13 8
638 25.99 temperature 25 43200 > th dose dependent rect. 5 1
644 26.00 atmosphere 1010 14400 > th dose independent no NA NA
682 26.01 wind 1 43200 > th dose independent rect. 9 4
697 26.01 atmosphere 1010 14400 > th dose independent rect. 4 23
703 26.01 atmosphere 1010 14400 > th dose independent rect. 23 23
740 26.02 atmosphere 1010 14400 > th dose independent rect. 1 23
764 26.03 atmosphere 1005 720 < th dose dependent sin 3 NA
772 26.04 wind 7 14400 > th dose independent rect. 15 1
773 26.04 wind 3 43200 < th dose independent rect. 13 1
843 26.05 atmosphere 1005 90 < th dose dependent rect. 8 15
844 26.05 atmosphere 1005 270 < th dose dependent rect. 6 16
845 26.05 wind 9 14400 > th dose dependent rect. 17 23
870 26.06 temperature 25 43200 > th dose dependent rect. 20 1
915 26.07 atmosphere 1005 270 < th dose dependent sin 0 NA
973 26.08 wind 9 14400 > th dose dependent sin 20 NA